7XRT

Bacteroides thetaiotaomicron ferulic acid esterase (BT_4077)

PDB DOI: https://doi.org/10.2210/pdb7XRT/pdb

Classification: HYDROLASE
Organism(s): Bacteroides thetaiotaomicron VPI-5482
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-05-11 Released: 2023-11-22
Deposition Author(s): Du, G.M., Wang, Y.L., Xin, F.J.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.01 Å
R-Value Free: 0.172
R-Value Work: 0.152
R-Value Observed: 0.153

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Insights into the regulatory mechanism of BtFae activity by oligomerization and a distinct substrate binding pocket adjacent to the active site

Du, G.M., Wang, Y.L., Xin, F.J.

To be published.

Macromolecule Content

Total Structure Weight: 334.86 kDa
Atom Count: 23,462
Modelled Residue Count: 2,680
Deposited Residue Count: 2,910
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ferulic acid esterase	A, B, C, D, E A, B, C, D, E, F, G, H, I, J	291	Bacteroides thetaiotaomicron VPI-5482	Mutation(s): 0 Gene Names: BT_4077
UniProt
Find proteins for Q8A0E4 (Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)) Explore Q8A0E4 Go to UniProtKB: Q8A0E4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8A0E4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MPD Query on MPD Download Ideal Coordinates CCD File SDF format, chain AA [auth I] SDF format, chain CA [auth J] SDF format, chain L [auth A] SDF format, chain P [auth D] SDF format, chain R [auth E] SDF format, chain T [auth F] SDF format, chain V [auth G] SDF format, chain W [auth G] SDF format, chain Y [auth H] MOL2 format, chain AA [auth I] MOL2 format, chain CA [auth J] MOL2 format, chain L [auth A] MOL2 format, chain P [auth D] MOL2 format, chain R [auth E] MOL2 format, chain T [auth F] MOL2 format, chain V [auth G] MOL2 format, chain W [auth G] MOL2 format, chain Y [auth H]	AA [auth I] CA [auth J] L [auth A] P [auth D] R [auth E] AA [auth I], CA [auth J], L [auth A], P [auth D], R [auth E], T [auth F], V [auth G], W [auth G], Y [auth H]	(4S)-2-METHYL-2,4-PENTANEDIOL C₆ H₁₄ O₂ SVTBMSDMJJWYQN-YFKPBYRVSA-N		Interactions Focus chain AA [auth I] Focus chain CA [auth J] Focus chain L [auth A] Focus chain P [auth D] Focus chain R [auth E] Focus chain T [auth F] Focus chain V [auth G] Focus chain W [auth G] Focus chain Y [auth H] Interactions & Density Focus chain AA [auth I] Focus chain CA [auth J] Focus chain L [auth A] Focus chain P [auth D] Focus chain R [auth E] Focus chain T [auth F] Focus chain V [auth G] Focus chain W [auth G] Focus chain Y [auth H]
CA Query on CA Download Ideal Coordinates CCD File SDF format, chain BA [auth J] SDF format, chain K [auth A] SDF format, chain M [auth B] SDF format, chain N [auth C] SDF format, chain O [auth D] SDF format, chain Q [auth E] SDF format, chain S [auth F] SDF format, chain U [auth G] SDF format, chain X [auth H] SDF format, chain Z [auth I] MOL2 format, chain BA [auth J] MOL2 format, chain K [auth A] MOL2 format, chain M [auth B] MOL2 format, chain N [auth C] MOL2 format, chain O [auth D] MOL2 format, chain Q [auth E] MOL2 format, chain S [auth F] MOL2 format, chain U [auth G] MOL2 format, chain X [auth H] MOL2 format, chain Z [auth I]	BA [auth J] K [auth A] M [auth B] N [auth C] O [auth D] BA [auth J], K [auth A], M [auth B], N [auth C], O [auth D], Q [auth E], S [auth F], U [auth G], X [auth H], Z [auth I]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain BA [auth J] Focus chain K [auth A] Focus chain M [auth B] Focus chain N [auth C] Focus chain O [auth D] Focus chain Q [auth E] Focus chain S [auth F] Focus chain U [auth G] Focus chain X [auth H] Focus chain Z [auth I] Interactions & Density Focus chain BA [auth J] Focus chain K [auth A] Focus chain M [auth B] Focus chain N [auth C] Focus chain O [auth D] Focus chain Q [auth E] Focus chain S [auth F] Focus chain U [auth G] Focus chain X [auth H] Focus chain Z [auth I]