7XP9 | pdb_00007xp9

Phytophthora infesfans RxLR effector AVRvnt1

• PDB DOI: https://doi.org/10.2210/pdb7XP9/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Phytophthora infestans T30-4
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-05-04 Released: 2023-06-07 
• Deposition Author(s): Xing, W., Hu, Q., Zhou, J., Yao, D.
• Funding Organization(s): Not funded

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.93 Å
• R-Value Free: 
  0.263 (Depositor), 0.264 (DCC) 
• R-Value Work: 
  0.222 (Depositor), 0.222 (DCC) 
• R-Value Observed: 
  0.226 (Depositor) 

Literature

Chloroplast Protein GLYK Hijacked by Phytophthora Infestans Effector AVRvnt1 in Cytoplasm to Activate NLR

Xing, W., Hu, Q., Zhou, J., Yao, D.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 9.58 kDa 
• Atom Count: 663 
• Modeled Residue Count: 76 
• Deposited Residue Count: 84 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RxLR effector protein Avr-vnt11	A	84	Phytophthora infestans T30-4	Mutation(s): 0  Gene Names: Avr-vnt1, PITG_16294
UniProt
Find proteins for D0NTY1 (Phytophthora infestans (strain T30-4)) Explore D0NTY1  Go to UniProtKB:  D0NTY1

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.93 Å
• R-Value Free:  0.263 (Depositor), 0.264 (DCC) 
• R-Value Work:  0.222 (Depositor), 0.222 (DCC) 
• R-Value Observed: 0.226 (Depositor) 

Space Group: P 6₅ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.004	α = 90
b = 54.004	β = 90
c = 116.547	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data scaling
PDB_EXTRACT	data extraction
HKL-2000	data reduction
PHENIX	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2023-06-07 
Deposition Author(s): Xing, W., Hu, Q., Zhou, J., Yao, D.

---

Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2023-06-07
  Type: Initial release
  
• Version 1.1: 2024-05-29
  Changes: Data collection