7XMP

High resolution structure of lectin-like Ox-LDL receptor 1 in space group P 32 2 1

• PDB DOI: https://doi.org/10.2210/pdb7XMP/pdb

• Classification: LIPID BINDING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli B
• Mutation(s): No 


• Deposited: 2022-04-26 Released: 2023-05-03 
• Deposition Author(s): Tomar, A., Varughese, K.I., Arockiasamy, A.
• Funding Organization(s): Council of Scientific & Industrial Research (CSIR), Department of Science & Technology (DST, India)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.27 Å
• R-Value Free: 0.197 
• R-Value Work: 0.158 
• R-Value Observed: 0.160 

Literature

High resolution structure of lectin like Ox-LDL receptor 1 in space group P 32 2 1

Tomar, A., Arockiasamy, A., Varughese, K.I.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 15.67 kDa 
• Atom Count: 1,159 
• Modelled Residue Count: 128 
• Deposited Residue Count: 138 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Oxidized low-density lipoprotein receptor 1	A	138	Homo sapiens	Mutation(s): 0  Gene Names: OLR1, CLEC8A, LOX1
UniProt & NIH Common Fund Data Resources
Find proteins for P78380 (Homo sapiens) Explore P78380  Go to UniProtKB:  P78380
PHAROS:  P78380 GTEx:  ENSG00000173391

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.27 Å
• R-Value Free: 0.197 
• R-Value Work: 0.158 
• R-Value Observed: 0.160 
• Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.03	α = 90
b = 50.03	β = 90
c = 91.6	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-05-03 
Deposition Author(s): Tomar, A., Varughese, K.I., Arockiasamy, A.

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Funding Organization	Location	Grant Number
Council of Scientific & Industrial Research (CSIR)	India	09/512(0221)/2016
Department of Science & Technology (DST, India)	India	EMR/2017/00506

Revision History  

• Version 1.0: 2023-05-03
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Refinement description