7XG0

CryoEM structure of type IV-A Csf-crRNA-dsDNA ternary complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Type IV-A CRISPR-Csf complex: Assembly, dsDNA targeting, and CasDinG recruitment.

Cui, N.Zhang, J.T.Liu, Y.Liu, Y.Liu, X.Y.Wang, C.Huang, H.Jia, N.

(2023) Mol Cell 83: 2493-2508.e5

  • DOI: https://doi.org/10.1016/j.molcel.2023.05.036
  • Primary Citation of Related Structures:  
    7XEX, 7XF0, 7XF1, 7XFZ, 7XG0, 7XG2, 7XG3, 7XG4

  • PubMed Abstract: 

    Type IV CRISPR-Cas systems, which are primarily found on plasmids and exhibit a strong plasmid-targeting preference, are the only one of the six known CRISPR-Cas types for which the mechanistic details of their function remain unknown. Here, we provide high-resolution functional snapshots of type IV-A Csf complexes before and after target dsDNA binding, either in the absence or presence of CasDinG, revealing the mechanisms underlying Csf crRNA complex assembly, "DWN" PAM-dependent dsDNA targeting, R-loop formation, and CasDinG recruitment. Furthermore, we establish that CasDinG, a signature DinG family helicase, harbors ssDNA-stimulated ATPase activity and ATP-dependent 5'-3' DNA helicase activity. In addition, we show that CasDinG unwinds the non-target strand (NTS) and target strand (TS) of target dsDNA from the Csf crRNA complex. These molecular details advance our mechanistic understanding of type IV-A CRISPR-Csf function and should enable Csf complexes to be harnessed as genome-engineering tools for biotechnological applications.


  • Organizational Affiliation

    Department of Biochemistry, School of Medicine, Southern University of Science and Technology, Shenzhen 518055, China.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Csf1253Pseudomonas aeruginosaMutation(s): 0 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Csf3220Pseudomonas aeruginosaMutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Csf2
C, D, E, F, G
348Pseudomonas aeruginosaMutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Csf5268Pseudomonas aeruginosaMutation(s): 0 
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Entity ID: 5
MoleculeChains LengthOrganismImage
crRNA61Pseudomonas aeruginosa
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Entity ID: 6
MoleculeChains LengthOrganismImage
NTS54Pseudomonas aeruginosa
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Entity ID: 7
MoleculeChains LengthOrganismImage
TS54Pseudomonas aeruginosa
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN (Subject of Investigation/LOI)
Query on ZN

Download Ideal Coordinates CCD File 
L [auth A]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2023-08-09
    Type: Initial release