7WQG

Bovin Alpha-lactalbumin binding with zinc ions

  • Classification: METAL BINDING PROTEIN
  • Organism(s): Bos taurus
  • Mutation(s): No 

  • Deposited: 2022-01-25 Released: 2022-08-31 
  • Deposition Author(s): Li, T., Zhang, T.
  • Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.144 
  • R-Value Observed: 0.160 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Zinc binding strength of proteins dominants zinc uptake in Caco-2 cells.

Li, T.Jiao, R.Ma, J.Zang, J.Zhao, G.Zhang, T.

(2022) RSC Adv 12: 21122-21128

  • DOI: https://doi.org/10.1039/d2ra03565k
  • Primary Citation of Related Structures:  
    7WQG, 7WQL

  • PubMed Abstract: 

    Zinc plays a vital role in structural, catalysis, and signal regulation in the human body. Zinc deficiency leads to the dysfunction of many organs and immunity systems. Diet proteins have distinct effects on zinc uptake. However, the mechanisms are uncovered. Here we select three principal components from whey protein: alpha-lactalbumin, beta-lactoglobulin, and bovine serum albumin, which bind with zinc at different affinities, to evaluate the relationship between their potential zinc uptake and protein binding. The experimental data shows that beta-lactoglobulin could promote zinc uptake, alpha-lactalbumin has minor effects, whereas bovine serum albumin reduced zinc uptake in Caco-2 cell lines. Zinc binding effects on protein structure were thoroughly inspected through fluorescent spectroscopy and X-ray crystallography. Isothermal titration calorimetry revealed that three proteins have different binding affinities toward zinc ions. We speculate that protein binding eliminates toxic effects from free zinc, and the binding strength dominates zinc uptake.


  • Organizational Affiliation

    College of Food Science and Nutritional Engineering, Key Laboratory of Precision Nutrition and Food Quality, Ministry of Education, China Agricultural University Beijing 100083 China tuozhang@cau.edu.cn.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Alpha-lactalbumin
A, B, C, D, E
A, B, C, D, E, F
121Bos taurusMutation(s): 0 
UniProt
Find proteins for P00711 (Bos taurus)
Explore P00711 
Go to UniProtKB:  P00711
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP00711
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.144 
  • R-Value Observed: 0.160 
  • Space Group: P 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 92.837α = 90
b = 92.837β = 90
c = 66.173γ = 120
Software Package:
Software NamePurpose
Aimlessdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31901638

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-31
    Type: Initial release
  • Version 1.1: 2023-11-29
    Changes: Data collection, Refinement description