7WH3

Solution structure of human stomatin SPFH domain in a phosphate buffer

PDB DOI: https://doi.org/10.2210/pdb7WH3/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-12-29 Released: 2022-06-08
Deposition Author(s): Kataoka, K., Tenno, T., Goda, N., Hibino, E., Hiroaki, H.
Funding Organization(s): Other private

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

A cryptic phosphate-binding pocket on the SPFH domain of human stomatin that regulates a novel fibril-like self-assembly

Kataoka, K., Suzuki, S., Tenno, T., Goda, N., Hibino, E., Oshima, A., Hiroaki, H.

(2022) Curr Res Struct Biol 4: 158-166

DOI: https://doi.org/10.1016/j.crstbi.2022.05.002

Macromolecule Content

Total Structure Weight: 12.48 kDa
Atom Count: 875
Modelled Residue Count: 113
Deposited Residue Count: 113
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Stomatin	A	113	Homo sapiens	Mutation(s): 0 Gene Names: STOM
UniProt & NIH Common Fund Data Resources
Find proteins for P27105 (Homo sapiens) Explore P27105 Go to UniProtKB: P27105
PHAROS: P27105 GTEx: ENSG00000148175
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P27105
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2022-06-08

Deposition Author(s):

Funding Organization	Location	Grant Number
Other private	Japan	--

Revision History (Full details and data files)

Version 1.0: 2022-06-08
Type: Initial release
Version 1.1: 2023-06-14
Changes: Other

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.