7W5D

High resolution structure of lectin-ike Ox-LDL Receptor 1

• PDB DOI: https://doi.org/10.2210/pdb7W5D/pdb

• Classification: LIPID BINDING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli B
• Mutation(s): No 


• Deposited: 2021-11-30 Released: 2022-12-07 
• Deposition Author(s): Tomar, A., Arockiasamy, A.
• Funding Organization(s): Council of Scientific & Industrial Research (CSIR), Department of Biotechnology (DBT, India), Department of Science & Technology (DST, India)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.14 Å
• R-Value Free: 0.193 
• R-Value Work: 0.180 
• R-Value Observed: 0.181 

Literature

High Resolution Structure of Lectin-Like Ox-LDL Receptor 1

Tomar, A., Arockiasamy, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 31.34 kDa 
• Atom Count: 2,534 
• Modelled Residue Count: 266 
• Deposited Residue Count: 276 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Oxidized low-density lipoprotein receptor 1	A, B	138	Homo sapiens	Mutation(s): 0  Gene Names: OLR1, CLEC8A, LOX1
UniProt & NIH Common Fund Data Resources
Find proteins for P78380 (Homo sapiens) Explore P78380  Go to UniProtKB:  P78380
PHAROS:  P78380 GTEx:  ENSG00000173391

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.14 Å
• R-Value Free: 0.193 
• R-Value Work: 0.180 
• R-Value Observed: 0.181 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.033	α = 90
b = 49.726	β = 98.57
c = 76.58	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
autoPROC	data reduction
autoPROC	data scaling
PHASER	phasing
Coot	model building

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-12-07 
Deposition Author(s): Tomar, A., Arockiasamy, A.

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Funding Organization	Location	Grant Number
Council of Scientific & Industrial Research (CSIR)	India	09/512(0221)/2016
Department of Biotechnology (DBT, India)	India	BT/PR8766/BRB/10/1701/2018
Department of Science & Technology (DST, India)	India	EMR/2017/005066
Department of Biotechnology (DBT, India)	India	BT/PR28080/BID/7/836/2018

Revision History  

• Version 1.0: 2022-12-07
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Refinement description