7VS3

The crystal structure of rat calcium-dependent activator protein for secretion (CAPS) C2PH


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.223 
  • R-Value Observed: 0.226 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

The C 2 and PH domains of CAPS constitute an effective PI(4,5)P2-binding unit essential for Ca 2+ -regulated exocytosis.

Zhang, L.Li, L.Wei, Z.Zhou, H.Liu, H.Wang, S.Ren, Y.Dai, T.Wang, J.Hu, Z.Ma, C.

(2023) Structure 31: 424

  • DOI: https://doi.org/10.1016/j.str.2023.02.004
  • Primary Citation of Related Structures:  
    7VS3

  • PubMed Abstract: 

    Ca 2+ -dependent activator proteins for secretion (CAPSs) are required for Ca 2+ -regulated exocytosis in neurons and neuroendocrine cells. CAPSs contain a pleckstrin homology (PH) domain that binds PI(4,5)P2-membrane. There is also a C 2 domain residing adjacent to the PH domain, but its function remains unclear. In this study, we solved the crystal structure of the CAPS-1 C 2 PH module. The structure showed that the C 2 and PH tandem packs against one another mainly via hydrophobic residues. With this interaction, the C 2 PH module exhibited enhanced binding to PI(4,5)P2-membrane compared with the isolated PH domain. In addition, we identified a new PI(4,5)P2-binding site on the C 2 domain. Disruption of either the tight interaction between the C 2 and PH domains or the PI(4,5)P2-binding sites on both domains significantly impairs CAPS-1 function in Ca 2+ -regulated exocytosis at the Caenorhabditis elegans neuromuscular junction (NMJ). These results suggest that the C 2 and PH domains constitute an effective unit to promote Ca 2+ -regulated exocytosis.


  • Organizational Affiliation

    Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Calcium-dependent secretion activator 1244Rattus norvegicusMutation(s): 0 
Gene Names: CadpsCapsCaps1
UniProt
Find proteins for Q62717 (Rattus norvegicus)
Explore Q62717 
Go to UniProtKB:  Q62717
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ62717
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.223 
  • R-Value Observed: 0.226 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 56.94α = 90
b = 62.452β = 90
c = 64.071γ = 90
Software Package:
Software NamePurpose
HKL-3000data reduction
HKL-3000data scaling
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31670846
National Natural Science Foundation of China (NSFC)China31721002

Revision History  (Full details and data files)

  • Version 1.0: 2023-02-15
    Type: Initial release
  • Version 1.1: 2023-04-05
    Changes: Database references
  • Version 1.2: 2023-04-26
    Changes: Database references
  • Version 1.3: 2023-11-29
    Changes: Data collection, Refinement description