7VCK | pdb_00007vck

NMR solution structures of a hairpin formed by GGCCTG repeats

• PDB DOI: https://doi.org/10.2210/pdb7VCK/pdb
• NAKB: 7VCK

• Classification: DNA
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2021-09-03 Released: 2022-02-02 
• Deposition Author(s): Yi, J., Wan, L., Guo, P.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 600 
• Conformers Submitted: 6 
• Selection Criteria: structures with the lowest energy 

Literature

NMR solution structures of d(GGCCTG)n repeats associated with spinocerebellar ataxia type 36.

Yi, J., Wan, L., Liu, Y., Lam, S.L., Chan, H.Y.E., Han, D., Guo, P.

(2022) Int J Biol Macromol 201: 607-615

• DOI: https://doi.org/10.1016/j.ijbiomac.2022.01.097

Biological Assembly 1  

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: NMR Distance Restraints

Macromolecule Content 

• Total Structure Weight: 3.95 kDa 
• Atom Count: 256 
• Modeled Residue Count: 12 
• Deposited Residue Count: 12 
• Unique nucleic acid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*GP*GP*CP*CP*TP*GP*GP*GP*CP*CP*TP*G)-3')	A	12	Homo sapiens

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NA	B [auth A], C [auth A], D [auth A], E [auth A], F [auth A], G [auth A], H [auth A], I [auth A], J [auth A], K [auth A], L [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 600 
• Conformers Submitted: 6 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2022-02-02 
Deposition Author(s): Yi, J., Wan, L., Guo, P.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2022-02-02
  Type: Initial release
  
• Version 1.1: 2024-05-15
  Changes: Data collection, Database references