7V8I

LolCD(E171Q)E with bound AMPPNP in nanodiscs


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cryo-EM structures of LolCDE reveal the molecular mechanism of bacterial lipoprotein sorting in Escherichia coli.

Bei, W.Luo, Q.Shi, H.Zhou, H.Zhou, M.Zhang, X.Huang, Y.

(2022) PLoS Biol 20: e3001823-e3001823

  • DOI: https://doi.org/10.1371/journal.pbio.3001823
  • Primary Citation of Related Structures:  
    7V8I, 7V8L, 7V8M

  • PubMed Abstract: 

    Bacterial lipoproteins perform a diverse array of functions including bacterial envelope biogenesis and microbe-host interactions. Lipoproteins in gram-negative bacteria are sorted to the outer membrane (OM) via the localization of lipoproteins (Lol) export pathway. The ATP-binding cassette (ABC) transporter LolCDE initiates the Lol pathway by selectively extracting and transporting lipoproteins for trafficking. Here, we report cryo-EM structures of LolCDE in apo, lipoprotein-bound, and AMPPNP-bound states at a resolution of 3.5 to 4.2 Å. Structure-based disulfide crosslinking, photo-crosslinking, and functional complementation assay verify the apo-state structure and reveal the molecular details regarding substrate selectivity and substrate entry route. Our studies snapshot 3 functional states of LolCDE in a transport cycle, providing deep insights into the mechanisms that underlie LolCDE-mediated lipoprotein sorting in E. coli.


  • Organizational Affiliation

    National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Lipoprotein-releasing system transmembrane protein LolCA [auth C]399Escherichia coli K-12Mutation(s): 0 
Gene Names: lolC
Membrane Entity: Yes 
UniProt
Find proteins for P0ADC3 (Escherichia coli (strain K12))
Explore P0ADC3 
Go to UniProtKB:  P0ADC3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0ADC3
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Lipoprotein-releasing system ATP-binding protein LolDB [auth D],
D [auth F]
233Escherichia coli K-12Mutation(s): 1 
Gene Names: lolD
EC: 7.6.2
Membrane Entity: Yes 
UniProt
Find proteins for P75957 (Escherichia coli (strain K12))
Explore P75957 
Go to UniProtKB:  P75957
Entity Groups  
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UniProt GroupP75957
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Lipoprotein-releasing system transmembrane protein LolEC [auth E]414Escherichia coli K-12Mutation(s): 0 
Gene Names: lolE
Membrane Entity: Yes 
UniProt
Find proteins for P75958 (Escherichia coli (strain K12))
Explore P75958 
Go to UniProtKB:  P75958
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75958
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China2016YFA0500404
Chinese Academy of SciencesChinaXDB37020201
National Natural Science Foundation of China (NSFC)China31625009

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-31
    Type: Initial release
  • Version 1.1: 2023-10-04
    Changes: Data collection, Database references