The crystal structure of bacterial DD-endopeptidase
Lee, W.C., Lee, J., Kim, Y.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase | 132 | Escherichia coli K-12 | Mutation(s): 1  Gene Names: mepS, spr, yeiV, b2175, JW2163 EC: 3.4.17.13 | ||
UniProt | |||||
Find proteins for P0AFV4 (Escherichia coli (strain K12)) Explore P0AFV4  Go to UniProtKB:  P0AFV4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0AFV4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MLT Query on MLT | C [auth A], E [auth B] | D-MALATE C4 H6 O5 BJEPYKJPYRNKOW-UWTATZPHSA-N | |||
EDO Query on EDO | D [auth A], F [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 82.871 | α = 90 |
b = 76.825 | β = 134.66 |
c = 58.207 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XSCALE | data scaling |
PDB_EXTRACT | data extraction |
XDS | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Research Foundation (NRF, Korea) | Korea, Republic Of | -- |