7UXL

Crystal structure of malaria transmission-blocking antigen Pfs48/45-6C variant in complex with human antibodies RUPA-44 and RUPA-29


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.86 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.183 
  • R-Value Observed: 0.185 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Highly potent, naturally acquired human monoclonal antibodies against Pfs48/45 block Plasmodium falciparum transmission to mosquitoes.

Fabra-Garcia, A.Hailemariam, S.de Jong, R.M.Janssen, K.Teelen, K.van de Vegte-Bolmer, M.van Gemert, G.J.Ivanochko, D.Semesi, A.McLeod, B.Vos, M.W.de Bruijni, M.H.C.Bolscher, J.M.Szabat, M.Vogt, S.Kraft, L.Duncan, S.Kamya, M.R.Feeney, M.E.Jagannathan, P.Greenhouse, B.Dechering, K.J.Sauerwein, R.W.King, C.R.MacGill, R.S.Bousema, T.Julien, J.P.Jore, M.M.

(2023) Immunity 56: 406-419.e7

  • DOI: https://doi.org/10.1016/j.immuni.2023.01.009
  • Primary Citation of Related Structures:  
    7UXL

  • PubMed Abstract: 

    Malaria transmission-blocking vaccines (TBVs) aim to induce antibodies that interrupt malaria parasite development in the mosquito, thereby blocking onward transmission, and provide a much-needed tool for malaria control and elimination. The parasite surface protein Pfs48/45 is a leading TBV candidate. Here, we isolated and characterized a panel of 81 human Pfs48/45-specific monoclonal antibodies (mAbs) from donors naturally exposed to Plasmodium parasites. Genetically diverse mAbs against each of the three domains (D1-D3) of Pfs48/45 were identified. The most potent mAbs targeted D1 and D3 and achieved >80% transmission-reducing activity in standard membrane-feeding assays, at 10 and 2 μg/mL, respectively. Co-crystal structures of D3 in complex with four different mAbs delineated two conserved protective epitopes. Altogether, these Pfs48/45-specific human mAbs provide important insight into protective and non-protective epitopes that can further our understanding of transmission and inform the design of refined malaria transmission-blocking vaccine candidates.


  • Organizational Affiliation

    Department of Medical Microbiology, Radboudumc, Nijmegen, the Netherlands.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
RUPA-44 Fab Kappa chainA [auth E]214Homo sapiensMutation(s): 0 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
RUPA-44 Fab Heavy chainB [auth F]230Homo sapiensMutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Gametocyte surface protein P45/48C [auth R]147Plasmodium falciparumMutation(s): 3 
Gene Names: PF45/48PFS45-48PFS45/48PF13_0247PF3D7_1346700
UniProt
Find proteins for Q8I6T1 (Plasmodium falciparum (isolate 3D7))
Explore Q8I6T1 
Go to UniProtKB:  Q8I6T1
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UniProt GroupQ8I6T1
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
RUPA-29 Fab Heavy chainD [auth A]223Homo sapiensMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
RUPA-29 Fab Lambda chainE [auth B]216Homo sapiensMutation(s): 0 
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAG (Subject of Investigation/LOI)
Query on NAG

Download Ideal Coordinates CCD File 
F
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.86 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.183 
  • R-Value Observed: 0.185 
  • Space Group: I 2 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 223.081α = 90
b = 223.081β = 90
c = 223.081γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health Research (CIHR)Canada428410
Ontario Early Researcher AwardsCanada--
Bill & Melinda Gates FoundationUnited StatesOPP1170236
Canada Research ChairsCanada--

Revision History  (Full details and data files)

  • Version 1.0: 2023-02-15
    Type: Initial release
  • Version 1.1: 2023-03-01
    Changes: Database references
  • Version 1.2: 2023-10-25
    Changes: Data collection, Refinement description