7U9G

Rabies virus glycoprotein pre-fusion trimer in complex with neutralizing antibody RVA122


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.39 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure of the rabies virus glycoprotein trimer bound to a prefusion-specific neutralizing antibody.

Callaway, H.M.Zyla, D.Larrous, F.de Melo, G.D.Hastie, K.M.Avalos, R.D.Agarwal, A.Corti, D.Bourhy, H.Saphire, E.O.

(2022) Sci Adv 8: eabp9151-eabp9151

  • DOI: https://doi.org/10.1126/sciadv.abp9151
  • Primary Citation of Related Structures:  
    7U9G

  • PubMed Abstract: 

    Rabies infection is nearly 100% lethal if untreated and kills more than 50,000 people annually, many of them children. Existing rabies vaccines target the rabies virus glycoprotein (RABV-G) but generate short-lived immune responses, likely because the protein is heterogeneous under physiological conditions. Here, we report the 3.39 Å cryo-electron microscopy structure of trimeric, prefusion RABV-G complexed with RVA122, a potently neutralizing human antibody. RVA122 binds to a quaternary epitope at the top of RABV-G, bridging domains and stabilizing RABV-G protomers in a prefusion state. RABV-G trimerization involves side-to-side interactions between the central α helix and adjacent loops, rather than contacts between central helices, and interactions among the fusion loops at the glycoprotein base. These results provide a basis from which to develop improved rabies vaccines based on RABV-G stabilized in the prefusion conformation.


  • Organizational Affiliation

    Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Glycoprotein
A, B, C
439Rabies virus strain Pasteur vaccinMutation(s): 0 
UniProt
Find proteins for P08667 (Rabies virus (strain Pasteur vaccins / PV))
Explore P08667 
Go to UniProtKB:  P08667
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08667
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
RVA122 Fab Light Chain
D, E, F
217Homo sapiensMutation(s): 0 
Entity Groups  
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Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
RVA122 Fab Heavy Chain
G, H, I
265Homo sapiensMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.39 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United States5F32AI147531-03
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United States5T32AI07244-36
Swiss National Science FoundationSwitzerlandP2EZP3_195680

Revision History  (Full details and data files)

  • Version 1.0: 2022-07-20
    Type: Initial release