7TYU | pdb_00007tyu

TEAD2 bound to Compound 2

• PDB DOI: https://doi.org/10.2210/pdb7TYU/pdb

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-02-14 Released: 2023-05-03 
• Deposition Author(s): Noland, C.L., Fong, R.
• Funding Organization(s): Other private

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.78 Å
• R-Value Free: 
  0.230 (Depositor), 0.234 (DCC) 
• R-Value Work: 
  0.197 (Depositor), 0.201 (DCC) 
• R-Value Observed: 
  0.199 (Depositor) 

Starting Model: experimental

Literature

Novel mechanism of YAP-TEAD inhibition results in targeted chromatin remodeling and reveals an expanded Hippo dependent landscape in cancers

Hagenbeek, T.J., Zbieg, J.R., Noland, C.L., Yao, X., Schmidt, S., Clausen, S., Steffek, M., Lee, W., Beroza, P., Martin, S., Lin, E., Fong, R., Di Lello, P., Kubala, M.H., Lacap, J.A., Yang, M.N.Y., Maddalo, D., Lau, J.T., An, L., Levy, E., Lorenzo, M.N., Lee, H.J., Pham, T.H., Modrusan, Z., Zang, R., Chen, Y.C., Li, J., Hafner, M., Chang, M.T., Crawford, J.J., Dey, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 53.55 kDa 
• Atom Count: 3,424 
• Modeled Residue Count: 399 
• Deposited Residue Count: 462 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcriptional enhancer factor TEF-4	A, B	231	Homo sapiens	Mutation(s): 0  Gene Names: TEAD2, TEF4
UniProt & NIH Common Fund Data Resources
Find proteins for Q15562 (Homo sapiens) Explore Q15562  Go to UniProtKB:  Q15562
PHAROS:  Q15562 GTEx:  ENSG00000074219

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
KTF (Subject of Investigation/LOI)	C [auth A], E [auth B]	(3R)-1-[(8S)-5-(4-cyclohexylphenyl)-7-oxo-4,7-dihydropyrazolo[1,5-a]pyrimidine-3-carbonyl]pyrrolidine-3-carbonitrile C24 H25 N5 O2 DGPFXAYXGFCGMH-INIZCTEOSA-N
TRS	D [auth A]	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.78 Å
• R-Value Free:  0.230 (Depositor), 0.234 (DCC) 
• R-Value Work:  0.197 (Depositor), 0.201 (DCC) 
• R-Value Observed: 0.199 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 115.27	α = 90
b = 61.526	β = 111.759
c = 79.412	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2023-05-03 
Deposition Author(s): Noland, C.L., Fong, R.

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Funding Organization	Location	Grant Number
Other private		--

Revision History  

• Version 1.0: 2023-05-03
  Type: Initial release
  
• Version 1.1: 2023-10-25
  Changes: Data collection, Refinement description