7TRJ

The eukaryotic translation initiation factor 2B from Homo sapiens with a H160D mutation in the beta subunit


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

A point mutation in the nucleotide exchange factor eIF2B constitutively activates the integrated stress response by allosteric modulation.

Boone, M.Wang, L.Lawrence, R.Frost, A.Walter, P.Schoof, M.

(2022) Elife 11

  • DOI: https://doi.org/10.7554/eLife.76171
  • Primary Citation of Related Structures:  
    7TRJ

  • PubMed Abstract: 

    In eukaryotic cells, stressors reprogram the cellular proteome by activating the integrated stress response (ISR). In its canonical form, stress-sensing kinases phosphorylate the eukaryotic translation initiation factor eIF2 (eIF2-P), which ultimately leads to reduced levels of ternary complex required for initiation of mRNA translation. Previously we showed that translational control is primarily exerted through a conformational switch in eIF2's nucleotide exchange factor, eIF2B, which shifts from its active A-State conformation to its inhibited I-State conformation upon eIF2-P binding, resulting in reduced nucleotide exchange on eIF2 (Schoof et al. 2021). Here, we show functionally and structurally how a single histidine to aspartate point mutation in eIF2B's β subunit (H160D) mimics the effects of eIF2-P binding by promoting an I-State like conformation, resulting in eIF2-P independent activation of the ISR. These findings corroborate our previously proposed A/I-State model of allosteric ISR regulation.


  • Organizational Affiliation

    Howard Hughes Medical Institute, University of California at San Francisco, San Francisco, United States.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Translation initiation factor eIF-2B subunit epsilonA,
F [auth B]
721Homo sapiensMutation(s): 0 
Gene Names: EIF2B5EIF2BE
UniProt & NIH Common Fund Data Resources
Find proteins for Q13144 (Homo sapiens)
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Go to UniProtKB:  Q13144
PHAROS:  Q13144
GTEx:  ENSG00000145191 
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UniProt GroupQ13144
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Translation initiation factor eIF-2B subunit betaB [auth D],
G [auth C]
351Homo sapiensMutation(s): 1 
Gene Names: EIF2B2EIF2BB
UniProt & NIH Common Fund Data Resources
Find proteins for P49770 (Homo sapiens)
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PHAROS:  P49770
GTEx:  ENSG00000119718 
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UniProt GroupP49770
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Translation initiation factor eIF-2B subunit deltaC [auth E],
H [auth F]
523Homo sapiensMutation(s): 0 
Gene Names: EIF2B4EIF2BD
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UI10 (Homo sapiens)
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PHAROS:  Q9UI10
GTEx:  ENSG00000115211 
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UniProt GroupQ9UI10
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Translation initiation factor eIF-2B subunit alphaD [auth G],
I [auth H]
305Homo sapiensMutation(s): 0 
Gene Names: EIF2B1EIF2BA
UniProt & NIH Common Fund Data Resources
Find proteins for Q14232 (Homo sapiens)
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PHAROS:  Q14232
GTEx:  ENSG00000111361 
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UniProt GroupQ14232
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Translation initiation factor eIF-2B subunit gammaE [auth I],
J
452Homo sapiensMutation(s): 0 
Gene Names: EIF2B3
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Find proteins for Q9NR50 (Homo sapiens)
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Go to UniProtKB:  Q9NR50
PHAROS:  Q9NR50
GTEx:  ENSG00000070785 
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UniProt GroupQ9NR50
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Howard Hughes Medical Institute (HHMI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2022-04-27
    Type: Initial release
  • Version 1.1: 2024-02-21
    Changes: Data collection