Download MendeleyStructure of HRas G12V in complex with GDP
Kouidmi, I., Maddalena, M., Laplante, S.To be published.
7TAM
HRas G12V in complex with GDP
- PDB DOI: https://doi.org/10.2210/pdb7TAM/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2021-12-21 Released: 2022-12-28
- Funding Organization(s): Other private
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.87 Å
- R-Value Free: 0.201
- R-Value Work: 0.174
- R-Value Observed: 0.175
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| GTPase HRas | 166 | Homo sapiens | Mutation(s): 1 Gene Names: HRAS, HRAS1 EC: 3.6.5.2 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01112 (Homo sapiens) Explore P01112 Go to UniProtKB: P01112 | |||||
PHAROS: P01112 GTEx: ENSG00000174775 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P01112 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GDP (Subject of Investigation/LOI) Query on GDP | B [auth A] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N |  | ||
| CA Query on CA | E [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| MG Query on MG | C [auth A], D [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.87 Å
- R-Value Free: 0.201
- R-Value Work: 0.174
- R-Value Observed: 0.175
- Space Group: H 3 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 92.35 | α = 90 |
| b = 92.35 | β = 90 |
| c = 120.58 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| MxDC | data collection |
| autoPROC | data processing |
| XDS | data reduction |
| XSCALE | data scaling |
| PHENIX | phasing |
| PDB_EXTRACT | data extraction |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-12-28 Deposition Author(s): Kouidmi, I., Maddalena, M., Laplante, S.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Other private | Canada | CQDM SynergiQC grant |
Revision History (Full details and data files)
- Version 1.0: 2022-12-28
Type: Initial release - Version 1.1: 2023-10-25
Changes: Data collection, Refinement description
