7T4X

AKT1 K+ channel from A. thaliana in MSP2N2 lipid nanodisc


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 2.0 of the entry. See complete history


Literature

Symmetry Reduction in a Hyperpolarization-Activated Homotetrameric Ion Channel.

Dickinson, M.S.Pourmal, S.Gupta, M.Bi, M.Stroud, R.M.

(2022) Biochemistry 61: 2177-2181

  • DOI: https://doi.org/10.1021/acs.biochem.1c00654
  • Primary Citation of Related Structures:  
    7T4X

  • PubMed Abstract: 

    Plants obtain nutrients from the soil via transmembrane transporters and channels in their root hairs, from which ions radially transport in toward the xylem for distribution across the plant body. We determined structures of the hyperpolarization-activated channel AKT1 from Arabidopsis thaliana , which mediates K + uptake from the soil into plant roots. These structures of AtAKT1 embedded in lipid nanodiscs show that the channel undergoes a reduction of C4 to C2 symmetry, possibly to regulate its electrical activation.


  • Organizational Affiliation

    Department of Biochemistry and Biophysics, University of California San Francisco, Genentech Hall, 600 16th Street, San Francisco, California 94158, United States.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Potassium channel AKT1
A, B, C, D
857Arabidopsis thalianaMutation(s): 0 
Gene Names: AKT1At2g26650F18A8.2
Membrane Entity: Yes 
UniProt
Find proteins for Q38998 (Arabidopsis thaliana)
Explore Q38998 
Go to UniProtKB:  Q38998
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ38998
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC3.2

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM24485

Revision History  (Full details and data files)

  • Version 1.0: 2021-12-22
    Type: Initial release
  • Version 1.1: 2022-01-12
    Changes: Database references
  • Version 2.0: 2022-10-26
    Changes: Advisory, Atomic model, Database references, Derived calculations, Structure summary