7SOM

Ciliary C2 central pair apparatus isolated from Chlamydomonas reinhardtii


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Ciliary central apparatus structure reveals mechanisms of microtubule patterning.

Gui, M.Wang, X.Dutcher, S.K.Brown, A.Zhang, R.

(2022) Nat Struct Mol Biol 29: 483-492

  • DOI: https://doi.org/10.1038/s41594-022-00770-2
  • Primary Citation of Related Structures:  
    7SOM, 7SQC

  • PubMed Abstract: 

    A pair of extensively modified microtubules form the central apparatus (CA) of the axoneme of most motile cilia, where they regulate ciliary motility. The external surfaces of both CA microtubules are patterned asymmetrically with large protein complexes that repeat every 16 or 32 nm. The composition of these projections and the mechanisms that establish asymmetry and longitudinal periodicity are unknown. Here, by determining cryo-EM structures of the CA microtubules, we identify 48 different CA-associated proteins, which in turn reveal mechanisms for asymmetric and periodic protein binding to microtubules. We identify arc-MIPs, a novel class of microtubule inner protein, that bind laterally across protofilaments and remodel tubulin structure and lattice contacts. The binding mechanisms utilized by CA proteins may be generalizable to other microtubule-associated proteins. These structures establish a foundation to elucidate the contributions of individual CA proteins to ciliary motility and ciliopathies.


  • Organizational Affiliation

    Department of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin beta443Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin alpha451Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 20RE [auth a],
SE [auth b],
TE [auth c],
UE [auth d]
618Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
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UniProt GroupA8IU92
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Unknown proteinVE [auth e],
WE [auth f],
XE [auth g]
201Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Unknown proteinAF [auth j],
YE [auth h],
ZE [auth i]
758Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Unknown proteinBF [auth k],
CF [auth l],
JF [auth s]
528Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
FAP65DF [auth m],
EF [auth n],
FF [auth o]
421Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
FAP70GF [auth p],
HF [auth q],
IF [auth r]
89Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3DKW3 (Chlamydomonas reinhardtii)
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
FAP147KF [auth A],
LF [auth B],
MF [auth C]
190Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3DUG8 (Chlamydomonas reinhardtii)
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
FAP178606Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3D8Z6 (Chlamydomonas reinhardtii)
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar WD repeat-containing protein Pf20RF [auth T],
SF [auth U],
TF [auth V],
UF [auth W]
93Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar associated proteinDG [auth D],
EG [auth E],
WF [auth bb]
2,257Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
FAP196AG [auth G],
BG [auth H],
CG [auth I],
ZF [auth F]
1,074Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
FAP213FG [auth J],
GG [auth K]
976Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
FAP225222Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
FAP239NG [auth A1]48Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
FAP388OG [auth A2],
QG [auth A4]
77Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
FAP424PG [auth A3]47Chlamydomonas reinhardtiiMutation(s): 0 
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Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GTP
Query on GTP

Download Ideal Coordinates CCD File 
AI [auth BL]
AJ [auth DH]
AN [auth JJ]
AO [auth LD]
AP [auth MJ]
AI [auth BL],
AJ [auth DH],
AN [auth JJ],
AO [auth LD],
AP [auth MJ],
BK [auth FB],
CH [auth AH],
CI [auth CB],
CL [auth GJ],
CM [auth IF],
DJ,
DN [auth JL],
DO [auth LF],
DP [auth ML],
EK [auth FD],
FH [auth AJ],
FI [auth CD],
FL [auth GL],
FM [auth IH],
GJ [auth DL],
GN [auth KB],
GO [auth LH],
HK [auth FF],
IH [auth AL],
II [auth CF],
IM [auth IJ],
JJ [auth EB],
JL [auth HD],
JN [auth KD],
JO [auth LJ],
KK [auth FH],
LH [auth BB],
LI [auth CH],
LM [auth IL],
MJ [auth ED],
ML [auth HF],
MN [auth KF],
MO [auth LL],
NK [auth FJ],
OH [auth BD],
OI [auth CJ],
OM [auth JB],
OO [auth MB],
PJ [auth EF],
PN [auth KH],
QK [auth FL],
QL [auth HI],
RH [auth BF],
RI [auth DB],
RM [auth JD],
RO [auth MD],
SJ [auth EH],
SL [auth HJ],
SN [auth KJ],
TG [auth AB],
TK [auth GD],
UH [auth BH],
UI [auth DD],
UM [auth JF],
UO [auth MF],
VJ [auth EJ],
VL [auth HL],
VN [auth KL],
WG [auth AD],
WK [auth GF],
XH [auth BJ],
XI [auth DF],
XM [auth JH],
XN [auth LB],
XO [auth MH],
YJ [auth EL],
ZG [auth AF],
ZK [auth GH],
ZL [auth ID]
GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
GDP
Query on GDP

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AK [auth FA]
BH [auth AG]
BL [auth GI]
BM [auth IE]
CJ [auth DI]
AK [auth FA],
BH [auth AG],
BL [auth GI],
BM [auth IE],
CJ [auth DI],
CN [auth JK],
CO [auth LE],
CP [auth MK],
DK [auth FC],
EH [auth AI],
EI [auth CC],
EL [auth GK],
EM [auth IG],
FJ [auth DK],
FN [auth JM],
FO [auth LG],
FP [auth CA],
GK [auth FE],
HH [auth AK],
HI [auth CE],
HL [auth GM],
HM [auth II],
IJ [auth EA],
IL [auth HC],
IN [auth KC],
IO [auth LI],
JK [auth FG],
KH [auth BA],
KI [auth CG],
KM [auth IK],
LJ [auth EC],
LL [auth HE],
LN [auth KE],
LO [auth LK],
MK [auth FI],
NH [auth BC],
NI [auth CI],
NM [auth IM],
OJ [auth EE],
OL [auth HG],
ON [auth KG],
PK [auth FK],
QH [auth BE],
QI [auth CK],
QM [auth JC],
QO [auth MC],
RJ [auth EG],
RL [auth HI],
RN [auth KI],
SG [auth AA],
SK [auth GC],
TH [auth BG],
TI [auth DC],
TM [auth JE],
TO [auth ME],
UJ [auth EI],
UL [auth HK],
UN [auth KK],
VG [auth AC],
VK [auth GE],
WH [auth BI],
WI [auth DE],
WM [auth JG],
WO [auth MG],
XJ [auth EK],
XL [auth HM],
YG [auth AE],
YK [auth GG],
YL [auth IC],
ZH [auth BK],
ZI [auth DG],
ZM [auth JI],
ZN [auth LC],
ZO [auth MI]
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
MG
Query on MG

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AH [auth AF]
AL [auth GH]
AM [auth ID]
BI [auth BL]
BJ [auth DH]
AH [auth AF],
AL [auth GH],
AM [auth ID],
BI [auth BL],
BJ [auth DH],
BN [auth JJ],
BO [auth LD],
BP [auth MJ],
CK [auth FB],
DH [auth AH],
DI [auth CB],
DL [auth GJ],
DM [auth IF],
EJ [auth DJ],
EN [auth JL],
EO [auth LF],
EP [auth ML],
FK [auth FD],
GH [auth AJ],
GI [auth CD],
GL,
GM [auth IH],
HJ [auth DL],
HN [auth KB],
HO [auth LH],
IK [auth FF],
JH [auth AL],
JI [auth CF],
JM [auth IJ],
KJ [auth EB],
KL [auth HD],
KN [auth KD],
KO [auth LJ],
LK [auth FH],
MH [auth BB],
MI [auth CH],
MM [auth IL],
NJ [auth EE],
NL [auth HF],
NN [auth KF],
NO [auth LL],
OK [auth FJ],
PH [auth BD],
PI [auth CJ],
PL [auth HH],
PM [auth JB],
PO [auth MB],
QJ [auth EF],
QN [auth KI],
RK [auth FL],
SH [auth BF],
SI [auth DB],
SM [auth JD],
SO [auth MD],
TJ [auth EH],
TL [auth HJ],
TN [auth KJ],
UG [auth AB],
UK [auth GD],
VH [auth BH],
VI [auth DD],
VM [auth JF],
VO [auth MF],
WJ [auth EJ],
WL [auth HL],
WN [auth KL],
XG [auth AD],
XK [auth GF],
YH [auth BJ],
YI [auth DF],
YM [auth JH],
YN [auth LB],
YO [auth MH],
ZJ [auth EL]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.19.2

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2022-04-13
    Type: Initial release
  • Version 1.1: 2022-06-08
    Changes: Database references