7S7P | pdb_00007s7p

NMR solution structure of a neurotoxic thionin from Urtica ferox


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with acceptable covalent geometry 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Neurotoxic and cytotoxic peptides underlie the painful stings of the tree nettle Urtica ferox.

Xie, J.Robinson, S.D.Gilding, E.K.Jami, S.Deuis, J.R.Rehm, F.B.H.Yap, K.Ragnarsson, L.Chan, L.Y.Hamilton, B.R.Harvey, P.J.Craik, D.J.Vetter, I.Durek, T.

(2022) J Biological Chem 298: 102218-102218

  • DOI: https://doi.org/10.1016/j.jbc.2022.102218
  • Primary Citation of Related Structures:  
    7S7P

  • PubMed Abstract: 

    The stinging hairs of plants from the family Urticaceae inject compounds that inflict pain to deter herbivores. The sting of the New Zealand tree nettle (Urtica ferox) is among the most painful of these and can cause systemic symptoms that can even be life-threatening; however, the molecular species effecting this response have not been elucidated. Here we reveal that two classes of peptide toxin are responsible for the symptoms of U. ferox stings: Δ-Uf1a is a cytotoxic thionin that causes pain via disruption of cell membranes, while β/δ-Uf2a defines a new class of neurotoxin that causes pain and systemic symptoms via modulation of voltage-gated sodium (Na V ) channels. We demonstrate using whole-cell patch-clamp electrophysiology experiments that β/δ-Uf2a is a potent modulator of human Na V 1.5 (EC 50 : 55 nM), Na V 1.6 (EC 50 : 0.86 nM), and Na V 1.7 (EC 50 : 208 nM), where it shifts the activation threshold to more negative potentials and slows fast inactivation. We further found that both toxin classes are widespread among members of the Urticeae tribe within Urticaceae, suggesting that they are likely to be pain-causing agents underlying the stings of other Urtica species. Comparative analysis of nettles of Urtica, and the recently described pain-causing peptides from nettles of another genus, Dendrocnide, indicates that members of tribe Urticeae have developed a diverse arsenal of pain-causing peptides.


  • Organizational Affiliation
    • Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, Australia.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
urthionin-Uf1a42Urtica feroxMutation(s): 0 
UniProt
Find proteins for A0A976SLN7 (Urtica ferox)
Explore A0A976SLN7 
Go to UniProtKB:  A0A976SLN7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A976SLN7
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with acceptable covalent geometry 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Australian Research Council (ARC)AustraliaDP200102377

Revision History  (Full details and data files)

  • Version 1.0: 2022-07-27
    Type: Initial release
  • Version 1.1: 2022-08-10
    Changes: Database references
  • Version 1.2: 2023-06-14
    Changes: Other
  • Version 1.3: 2024-11-06
    Changes: Data collection, Database references, Structure summary