7RRO

Structure of the 48-nm repeat doublet microtubule from bovine tracheal cilia


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

De novo identification of mammalian ciliary motility proteins using cryo-EM.

Gui, M.Farley, H.Anujan, P.Anderson, J.R.Maxwell, D.W.Whitchurch, J.B.Botsch, J.J.Qiu, T.Meleppattu, S.Singh, S.K.Zhang, Q.Thompson, J.Lucas, J.S.Bingle, C.D.Norris, D.P.Roy, S.Brown, A.

(2021) Cell 184: 5791

  • DOI: https://doi.org/10.1016/j.cell.2021.10.007
  • Primary Citation of Related Structures:  
    7RRO

  • PubMed Abstract: 

    Dynein-decorated doublet microtubules (DMTs) are critical components of the oscillatory molecular machine of cilia, the axoneme, and have luminal surfaces patterned periodically by microtubule inner proteins (MIPs). Here we present an atomic model of the 48-nm repeat of a mammalian DMT, derived from a cryoelectron microscopy (cryo-EM) map of the complex isolated from bovine respiratory cilia. The structure uncovers principles of doublet microtubule organization and features specific to vertebrate cilia, including previously unknown MIPs, a luminal bundle of tektin filaments, and a pentameric dynein-docking complex. We identify a mechanism for bridging 48- to 24-nm periodicity across the microtubule wall and show that loss of the proteins involved causes defective ciliary motility and laterality abnormalities in zebrafish and mice. Our structure identifies candidate genes for diagnosis of ciliopathies and provides a framework to understand their functions in driving ciliary motility.


  • Organizational Affiliation

    Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein C9orf135 homologA [auth 0],
H [auth 7]
232Bos taurusMutation(s): 0 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
EF-hand domain family member BB [auth 1],
C [auth 2]
877Bos taurusMutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Methyl-CpG binding domain protein 1D [auth 3],
E [auth 4]
514Bos taurusMutation(s): 0 
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Find proteins for F1N7G5 (Bos taurus)
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Nucleoside diphosphate kinase 7F [auth 5],
G [auth 6]
377Bos taurusMutation(s): 0 
EC: 2.7.4.6 (PDB Primary Data), 3.1 (UniProt), 2.7 (UniProt)
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein C1orf158 homologI [auth 8],
J [auth 9]
196Bos taurusMutation(s): 0 
UniProt
Find proteins for Q2TA11 (Bos taurus)
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Meiosis-specific nuclear structural protein 1DA [auth B],
K [auth A]
494Bos taurusMutation(s): 0 
UniProt
Find proteins for Q2KIQ2 (Bos taurus)
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Tektin-1L [auth A0],
M [auth A1],
N [auth A2],
O [auth A3],
P [auth A4]
418Bos taurusMutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin alpha-1D chain
AA [auth AK],
AB [auth BM],
AE [auth FG],
AG [auth IC],
AI [auth LK],
AJ [auth NG],
AM [auth TC],
BK [auth PG],
BL [auth RE],
BN [auth VC],
CA [auth AM],
CE [auth FI],
CG [auth IE],
CI [auth LM],
CJ [auth NI],
CM [auth TE],
DD [auth EC],
DH [auth KC],
DK [auth PI],
DL [auth RG],
DN [auth VE],
EE [auth FK],
EG [auth IG],
EJ [auth NK],
EM [auth TG],
FD [auth EE],
FH [auth KE],
FK [auth PK],
FL [auth RI],
FN [auth VG],
GE [auth FM],
GG [auth II],
GI [auth MC],
GM [auth TI],
HD [auth EG],
HF [auth HC],
HH [auth KG],
HK [auth PM],
HL [auth RK],
HN [auth VI],
IG [auth IK],
II [auth ME],
IJ [auth OA],
IM [auth TK],
JC [auth DA],
JD [auth EI],
JF [auth HE],
JH [auth KI],
JK [auth QA],
JL [auth RM],
JN [auth VK],
KE [auth GC],
KG [auth IM],
KI [auth MG],
KJ [auth OC],
KM [auth TM],
LC [auth DC],
LD [auth EK],
LF [auth HG],
LH [auth KK],
LK [auth QC],
LL [auth SA],
LN [auth VM],
MB [auth CA],
ME [auth GE],
MG [auth IO],
MI,
MJ [auth OE],
NC [auth DE],
ND [auth EM],
NF [auth HI],
NH [auth KM],
NK [auth QE],
NL [auth SC],
NM [auth UC],
OA [auth BA],
OB [auth CC],
OE [auth GG],
OI [auth MK],
OJ [auth OG],
PC [auth DG],
PF [auth HK],
PG [auth JC],
PH [auth KO],
PK [auth QG],
PL [auth SE],
PM [auth UE],
PN [auth WC],
Q [auth AA],
QA [auth BC],
QB [auth CE],
QE [auth GI],
QI [auth MM],
QJ [auth OI],
RC [auth DI],
RF [auth HM],
RG [auth JE],
RK [auth QI],
RL [auth SG],
RM [auth UG],
RN [auth WE],
S [auth AC],
SA [auth BE],
SB [auth CG],
SE [auth GK],
SH [auth LC],
SJ [auth OK],
TC [auth DK],
TF [auth HO],
TG [auth JG],
TK [auth QK],
TL [auth SI],
TM [auth UI],
TN [auth WG],
U [auth AE],
UA [auth BG],
UB [auth CI],
UE [auth GM],
UH [auth LE],
UI [auth NA],
VC [auth DM],
VG [auth JI],
VJ [auth PA],
VK [auth QM],
VL [auth SK],
VM [auth UK],
VN [auth WI],
W [auth AG],
WA [auth BI],
WB [auth CK],
WD [auth FC],
WH [auth LG],
WI [auth NC],
XG [auth JK],
XJ [auth PC],
XK [auth RA],
XL [auth SM],
XM [auth UM],
XN [auth WK],
Y [auth AI],
YA [auth BK],
YB [auth CM],
YD [auth FE],
YH [auth LI],
YI [auth NE],
ZG [auth JM],
ZJ [auth PE],
ZK [auth RC],
ZN [auth WM]
452Bos taurusMutation(s): 0 
EC: 3.6.5
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin beta-4B chain
AH [auth JN],
AK [auth PF],
AL [auth RD],
AN [auth VB],
AO [auth WN],
BA [auth AL],
BE [auth FH],
BG [auth ID],
BI [auth LL],
BJ [auth NH],
BM [auth TD],
CD [auth EB],
CH [auth KB],
CK [auth PH],
CL [auth RF],
CN [auth VD],
DE [auth FJ],
DG [auth IF],
DI [auth LN],
DJ [auth NJ],
DM [auth TF],
ED,
EH [auth KD],
EK [auth PJ],
EL [auth RH],
EN [auth VF],
FE [auth FL],
FG [auth IH],
FI [auth MB],
FJ [auth NL],
FM [auth TH],
GD [auth EF],
GF [auth HB],
GH [auth KF],
GK [auth PL],
GL [auth RJ],
GN [auth VH],
HE [auth FN],
HG [auth IJ],
HI [auth MD],
HJ [auth O0],
HM [auth TJ],
ID [auth EH],
IF [auth HD],
IH [auth KH],
IL [auth RL],
IN [auth VJ],
JE [auth GB],
JG [auth IL],
JI [auth MF],
JJ [auth OB],
JM [auth TL],
KC [auth DB],
KD [auth EJ],
KF [auth HF],
KH [auth KJ],
KK [auth QB],
KN [auth VL],
LE [auth GD],
LG [auth IN],
LI [auth MH],
LJ [auth OD],
MC [auth DD],
MD [auth EL],
MF [auth HH],
MH [auth KL],
MK [auth QD],
ML [auth SB],
MM [auth UB],
MN [auth VN],
NB [auth CB],
NE [auth GF],
NI [auth MJ],
NJ [auth OF],
OC [auth DF],
OD [auth EN],
OF [auth HJ],
OG [auth JB],
OH [auth KN],
OK [auth QF],
OL [auth SD],
OM [auth UD],
ON [auth WB],
PA [auth BB],
PB [auth CD],
PE [auth GH],
PI [auth ML],
PJ [auth OH],
QC [auth DH],
QF [auth HL],
QG [auth JD],
QK [auth QH],
QL [auth SF],
QM [auth UF],
QN [auth WD],
R [auth AB],
RA [auth BD],
RB [auth CF],
RE [auth GJ],
RH [auth LB],
RI [auth MN],
RJ [auth OJ],
SC [auth DJ],
SF [auth HN],
SG [auth JF],
SK [auth QJ],
SL [auth SH],
SM [auth UH],
SN [auth WF],
T [auth AD],
TA [auth BF],
TB [auth CH],
TE [auth GL],
TH [auth LD],
TI [auth N0],
TJ [auth OL],
UC [auth DL],
UG [auth JH],
UK [auth QL],
UL [auth SJ],
UM [auth UJ],
UN [auth WH],
V [auth AF],
VA [auth BH],
VB [auth CJ],
VD [auth FB],
VE [auth GN],
VH [auth LF],
VI [auth NB],
WC [auth DN],
WG [auth JJ],
WJ [auth PB],
WL [auth SL],
WM [auth UL],
WN [auth WJ],
X [auth AH],
XA [auth BJ],
XB [auth CL],
XD [auth FD],
XH [auth LH],
XI [auth ND],
YG [auth JL],
YJ [auth PD],
YK [auth RB],
YM [auth UN],
YN [auth WL],
Z [auth AJ],
ZA [auth BL],
ZD [auth FF],
ZF [auth IB],
ZH [auth LJ],
ZI [auth NF],
ZL [auth TB]
445Bos taurusMutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Tektin-2430Bos taurusMutation(s): 0 
UniProt
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein C1orf189 homologBB [auth C]101Bos taurusMutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Tektin-3490Bos taurusMutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Sperm associated antigen 8ZB [auth D]484Bos taurusMutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Tektin-4447Bos taurusMutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia and flagella associated protein 161PD [auth F],
XC [auth E]
321Bos taurusMutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
TEKTIP1AD [auth E2],
BD [auth E3],
YC [auth E0],
ZC [auth E1]
208Bos taurusMutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Pierce2IE [auth G]120Bos taurusMutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
Protein FAM166B274Bos taurusMutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
Coiled-coil domain containing 114XE [auth H1],
YE [auth H2],
ZE [auth H3]
687Bos taurusMutation(s): 0 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
Outer dynein arm-docking complex subunit 3AF [auth H4],
BF [auth H5],
CF [auth H6]
621Bos taurusMutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
Armadillo repeat containing 4DF [auth H7],
EF [auth H8],
FF [auth H9]
1,044Bos taurusMutation(s): 0 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
TTC25 proteinVF [auth I1],
WF [auth I2]
683Bos taurusMutation(s): 0 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
EF-hand calcium-binding domain-containing protein 1XF [auth I3],
YF [auth I4]
212Bos taurusMutation(s): 0 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
RIB43A-like with coiled-coils protein 2GJ [auth O],
IK [auth Q],
KL [auth S],
UJ [auth P],
WK [auth R]
377Bos taurusMutation(s): 0 
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
EF-hand domain containing 1LM [auth U],
YL [auth T],
ZM [auth V]
640Bos taurusMutation(s): 0 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
EFHC2BO [auth X],
JO [auth Y],
NN [auth W],
QO [auth Z]
733Bos taurusMutation(s): 0 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 20193Bos taurusMutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
PACRG protein257Bos taurusMutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia and flagella associated protein 45RO [auth a],
SO [auth b],
TO [auth c],
UO [auth d]
549Bos taurusMutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia and flagella associated protein 52VO [auth e],
WO [auth f],
XO [auth g]
623Bos taurusMutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
Enkurin, TRPC channel interacting proteinAP [auth j],
BP [auth k],
YO [auth h],
ZO [auth i]
259Bos taurusMutation(s): 0 
UniProt
Find proteins for E1B836 (Bos taurus)
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Go to UniProtKB:  E1B836
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE1B836
Sequence Annotations
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
Protein FlattopCP [auth l],
DP [auth m],
EP [auth n]
196Bos taurusMutation(s): 0 
UniProt
Find proteins for Q3SZT6 (Bos taurus)
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Go to UniProtKB:  Q3SZT6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ3SZT6
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
Coiled-coil domain containing 173FP [auth o],
GP [auth p]
547Bos taurusMutation(s): 0 
UniProt
Find proteins for E1BJL9 (Bos taurus)
Explore E1BJL9 
Go to UniProtKB:  E1BJL9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE1BJL9
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
Chromosome 3 C1orf194 homologHP [auth q],
IP [auth r],
JP [auth s]
170Bos taurusMutation(s): 0 
UniProt
Find proteins for E1B9I5 (Bos taurus)
Explore E1B9I5 
Go to UniProtKB:  E1B9I5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE1B9I5
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
EFCAB6KP [auth t]1,497Bos taurusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
Pierce1LP [auth y],
MP [auth z]
136Bos taurusMutation(s): 0 
UniProt
Find proteins for Q32P67 (Bos taurus)
Explore Q32P67 
Go to UniProtKB:  Q32P67
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ32P67
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Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GTP
Query on GTP

Download Ideal Coordinates CCD File 
ABA [auth PC]
ACA [auth QG]
ADA [auth RK]
AEA [auth TC]
AGA [auth VM]
ABA [auth PC],
ACA [auth QG],
ADA [auth RK],
AEA [auth TC],
AGA [auth VM],
AT [auth EI],
AW [auth II],
AY [auth LC],
BAA [auth NK],
BFA [auth UI],
BR [auth CA],
BS [auth DE],
BX [auth JM],
CQ [auth AK],
CV [auth HG],
CZ [auth MI],
DBA [auth PE],
DCA [auth QI],
DDA [auth RM],
DEA [auth TE],
DT [auth EK],
DU [auth GC],
DW [auth IK],
DY [auth LE],
EFA [auth UK],
EGA [auth WC],
ER [auth CC],
ES [auth DG],
FAA [auth OA],
FDA [auth SA],
FQ [auth AM],
FV [auth HI],
FX [auth KC],
FZ [auth MK],
GBA [auth PG],
GCA [auth QK],
GEA [auth TG],
GT [auth EM],
GU [auth GE],
GW [auth IM],
GY [auth LG],
HFA [auth UM],
HGA [auth WE],
HQ [auth BA],
HR [auth CE],
HS [auth DI],
IAA [auth OC],
IDA [auth SC],
IV [auth HK],
IX [auth KE],
IZ [auth MM],
JBA [auth PI],
JCA [auth QM],
JEA [auth TI],
JU [auth GG],
JW [auth IO],
JY [auth LI],
KGA [auth WG],
KQ [auth BC],
KR [auth CG],
KS [auth DK],
KT [auth FC],
LAA [auth OE],
LCA [auth RA],
LDA [auth SE],
LFA [auth VC],
LV [auth HM],
LX [auth KG],
MBA [auth PK],
MEA [auth TK],
MU [auth GI],
MW [auth JC],
MY [auth LK],
MZ [auth NA],
NGA [auth WI],
NP [auth AA],
NQ [auth BE],
NR [auth CI],
NS [auth DM],
NT [auth FE],
OAA [auth OG],
OCA [auth RC],
ODA [auth SG],
OFA [auth VE],
OV [auth HO],
OX [auth KI],
PBA [auth PM],
PEA [auth TM],
PU [auth GK],
PW [auth JE],
PY [auth LM],
PZ [auth NC],
QGA [auth WK],
QP [auth AC],
QQ [auth BG],
QR [auth CK],
QT [auth FG],
RAA [auth OI],
RBA [auth QA],
RCA [auth RE],
RDA [auth SI],
RFA [auth VG],
RS [auth EC],
RV [auth IC],
RX [auth KK],
SEA [auth UC],
SU [auth GM],
SW [auth JG],
SZ [auth NE],
TGA [auth WM],
TP [auth AE],
TQ [auth BI],
TR [auth CM],
TT [auth FI],
TY [auth MC],
UAA [auth OK],
UBA [auth QC],
UCA [auth RG],
UDA [auth SK],
UFA [auth VI],
US [auth EE],
UV [auth IE],
UX [auth KM],
VEA [auth UE],
VR [auth DA],
VW [auth JI],
VZ [auth NG],
WP [auth AG],
WQ [auth BK],
WT [auth FK],
WU [auth HC],
WY [auth ME],
XAA [auth PA],
XBA [auth QE],
XCA [auth RI],
XDA [auth SM],
XFA [auth VK],
XS [auth EG],
XV [auth IG],
XX [auth KO],
YEA [auth UG],
YR [auth DC],
YW [auth JK],
YZ [auth NI],
ZP [auth AI],
ZQ [auth BM],
ZT [auth FM],
ZU [auth HE],
ZY [auth MG]
GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
GDP
Query on GDP

Download Ideal Coordinates CCD File 
AAA [auth NJ]
AFA [auth UH]
AS [auth DD]
AX [auth JL]
BQ [auth AJ]
AAA [auth NJ],
AFA [auth UH],
AS [auth DD],
AX [auth JL],
BQ [auth AJ],
BU [auth FN],
BV [auth HF],
BZ [auth MH],
CBA [auth PD],
CCA [auth QH],
CDA [auth RL],
CEA [auth TD],
CGA [auth VN],
CT [auth EJ],
CU [auth GB],
CW [auth IJ],
CY [auth LD],
DAA [auth NL],
DFA [auth UJ],
DGA [auth WB],
DR [auth CB],
DS [auth DF],
DX [auth JN],
EAA [auth O0],
EQ [auth AL],
EV [auth HH],
EX [auth KB],
EZ [auth MJ],
FBA [auth PF],
FCA [auth QJ],
FEA [auth TF],
FT [auth EL],
FU [auth GD],
FW [auth IL],
FY [auth LF],
GFA [auth UL],
GGA [auth WD],
GR [auth CD],
GS [auth DH],
HAA [auth OB],
HDA [auth SB],
HV [auth HJ],
HX [auth KD],
HZ [auth ML],
IBA [auth PH],
ICA [auth QL],
IEA [auth TH],
IT [auth EN],
IU [auth GF],
IW [auth IN],
IY [auth LH],
JFA [auth UN],
JGA [auth WF],
JQ [auth BB],
JR [auth CF],
JS [auth DJ],
JT [auth FB],
KAA [auth OD],
KDA [auth SD],
KFA [auth VB],
KV [auth HL],
KX [auth KF],
KZ [auth MN],
LBA [auth PJ],
LEA [auth TJ],
LU [auth GH],
LW [auth JB],
LY [auth LJ],
LZ [auth N0],
MGA [auth WH],
MQ [auth BD],
MR [auth CH],
MS [auth DL],
MT [auth FD],
NAA [auth OF],
NCA [auth RB],
NDA [auth SF],
NFA [auth VD],
NV [auth HN],
NX [auth KH],
OBA [auth PL],
OEA [auth TL],
OU [auth GJ],
OW [auth JD],
OY [auth LL],
OZ [auth NB],
PGA [auth WJ],
PP [auth AB],
PQ [auth BF],
PR [auth CJ],
PS [auth DN],
PT [auth FF],
QAA [auth OH],
QCA [auth RD],
QDA [auth SH],
QFA [auth VF],
QS [auth EB],
QV [auth IB],
QX [auth KJ],
REA [auth UB],
RU [auth GL],
RW [auth JF],
RY [auth LN],
RZ [auth ND],
SGA [auth WL],
SP [auth AD],
SQ [auth BH],
SR [auth CL],
ST [auth FH],
SY [auth MB],
TAA [auth OJ],
TBA [auth QB],
TCA [auth RF],
TDA [auth SJ],
TFA [auth VH],
TS [auth ED],
TV [auth ID],
TX [auth KL],
UEA [auth UD],
UU [auth GN],
UW [auth JH],
UZ [auth NF],
VGA [auth WN],
VP [auth AF],
VQ [auth BJ],
VT [auth FJ],
VU [auth HB],
VY [auth MD],
WAA [auth OL],
WBA [auth QD],
WCA [auth RH],
WDA [auth SL],
WFA [auth VJ],
WS [auth EF],
WV [auth IF],
WX [auth KN],
XEA [auth UF],
XR [auth DB],
XW [auth JJ],
XZ [auth NH],
YP [auth AH],
YQ [auth BL],
YT [auth FL],
YU [auth HD],
YY [auth MF],
ZAA [auth PB],
ZBA [auth QF],
ZCA [auth RJ],
ZDA [auth TB],
ZFA [auth VL],
ZS [auth EH],
ZV [auth IH],
ZX [auth LB]
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
AQ [auth AI]
AR [auth BM]
AU [auth FM]
AV [auth HE]
AZ [auth MG]
AQ [auth AI],
AR [auth BM],
AU [auth FM],
AV [auth HE],
AZ [auth MG],
BBA [auth PC],
BCA [auth QG],
BDA [auth RK],
BEA [auth TC],
BGA [auth VM],
BT [auth EI],
BW [auth II],
BY [auth LC],
CAA [auth NK],
CFA [auth UI],
CR [auth CA],
CS [auth DE],
CX [auth JM],
DQ [auth AK],
DV [auth HG],
DZ [auth MI],
EBA [auth PE],
ECA [auth QI],
EDA [auth RM],
EEA [auth TE],
ET [auth EK],
EU [auth GC],
EW [auth IK],
EY [auth LE],
FFA [auth UK],
FGA [auth WC],
FR [auth CC],
FS [auth DG],
GAA [auth OA],
GDA [auth SA],
GQ [auth AM],
GV [auth HI],
GX [auth KC],
GZ [auth MK],
HBA [auth PG],
HCA [auth QK],
HEA [auth TG],
HT [auth EM],
HU [auth GE],
HW [auth IM],
HY [auth LG],
IFA [auth UM],
IGA [auth WE],
IQ [auth BA],
IR [auth CE],
IS [auth DI],
JAA [auth OC],
JDA [auth SC],
JV [auth HK],
JX [auth KE],
JZ [auth MM],
KBA [auth PI],
KCA [auth QM],
KEA [auth TI],
KU [auth GG],
KW [auth IO],
KY [auth LI],
LGA [auth WG],
LQ [auth BC],
LR [auth CG],
LS [auth DK],
LT [auth FC],
MAA [auth OE],
MCA [auth RA],
MDA [auth SE],
MFA [auth VC],
MV [auth HM],
MX [auth KG],
NBA [auth PK],
NEA [auth TK],
NU [auth GI],
NW [auth JC],
NY [auth LK],
NZ [auth NA],
OGA [auth WI],
OP [auth AA],
OQ [auth BE],
OR [auth CI],
OS [auth DM],
OT [auth FE],
PAA [auth OG],
PCA [auth RC],
PDA [auth SG],
PFA [auth VE],
PV [auth HO],
PX [auth KI],
QBA [auth PM],
QEA [auth TM],
QU [auth GK],
QW [auth JE],
QY [auth LM],
QZ [auth NC],
RGA [auth WK],
RP [auth AC],
RQ [auth BG],
RR [auth CK],
RT [auth FG],
SAA [auth OI],
SBA [auth QA],
SCA [auth RE],
SDA [auth SI],
SFA [auth VG],
SS [auth EC],
SV [auth IC],
SX [auth KK],
TEA [auth UC],
TU [auth GM],
TW [auth JG],
TZ [auth NE],
UGA [auth WM],
UP [auth AE],
UQ [auth BI],
UR [auth CM],
UT [auth FI],
UY [auth MC],
VAA [auth OK],
VBA [auth QC],
VCA [auth RG],
VDA [auth SK],
VFA [auth VI],
VS [auth EE],
VV [auth IE],
VX [auth KM],
WEA [auth UE],
WR [auth DA],
WW [auth JI],
WZ [auth NG],
XP [auth AG],
XQ [auth BK],
XT [auth FK],
XU [auth HC],
XY [auth ME],
YAA [auth PA],
YBA [auth QE],
YCA [auth RI],
YDA [auth SM],
YFA [auth VK],
YS [auth EG],
YV [auth IG],
YX [auth KO],
ZEA [auth UG],
ZR [auth DC],
ZW [auth JK],
ZZ [auth NI]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTPHENIX1.18

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2021-10-27
    Type: Initial release
  • Version 1.1: 2021-11-10
    Changes: Database references
  • Version 1.2: 2021-11-24
    Changes: Database references
  • Version 1.3: 2024-06-05
    Changes: Data collection