7R5S

Structure of the human CCAN bound to alpha satellite DNA


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.83 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of the human inner kinetochore bound to a centromeric CENP-A nucleosome.

Yatskevich, S.Muir, K.W.Bellini, D.Zhang, Z.Yang, J.Tischer, T.Predin, M.Dendooven, T.McLaughlin, S.H.Barford, D.

(2022) Science 376: 844-852

  • DOI: https://doi.org/10.1126/science.abn3810
  • Primary Citation of Related Structures:  
    7PB4, 7PB8, 7PII, 7PKN, 7R5R, 7R5S, 7R5V, 7YWX, 7YYH

  • PubMed Abstract: 

    Kinetochores assemble onto specialized centromeric CENP-A (centromere protein A) nucleosomes (CENP-A Nuc ) to mediate attachments between chromosomes and the mitotic spindle. We describe cryo-electron microscopy structures of the human inner kinetochore constitutive centromere associated network (CCAN) complex bound to CENP-A Nuc reconstituted onto α-satellite DNA. CCAN forms edge-on contacts with CENP-A Nuc , and a linker DNA segment of the α-satellite repeat emerges from the fully wrapped end of the nucleosome to thread through the central CENP-LN channel that tightly grips the DNA. The CENP-TWSX histone-fold module further augments DNA binding and partially wraps the linker DNA in a manner reminiscent of canonical nucleosomes. Our study suggests that the topological entrapment of the linker DNA by CCAN provides a robust mechanism by which kinetochores withstand both pushing and pulling forces exerted by the mitotic spindle.


  • Organizational Affiliation

    MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein HA [auth H]247Homo sapiensMutation(s): 0 
Gene Names: CENPHICEN35
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Find proteins for Q9H3R5 (Homo sapiens)
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Go to UniProtKB:  Q9H3R5
PHAROS:  Q9H3R5
GTEx:  ENSG00000153044 
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UniProt GroupQ9H3R5
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein IB [auth I]756Homo sapiensMutation(s): 0 
Gene Names: CENPIFSHPRH1ICEN19LRPR1
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Find proteins for Q92674 (Homo sapiens)
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PHAROS:  Q92674
GTEx:  ENSG00000102384 
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UniProt GroupQ92674
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein KD [auth K]269Homo sapiensMutation(s): 0 
Gene Names: CENPKICEN37FKSG14
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Find proteins for Q9BS16 (Homo sapiens)
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PHAROS:  Q9BS16
GTEx:  ENSG00000123219 
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UniProt GroupQ9BS16
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein LE [auth L]344Homo sapiensMutation(s): 0 
Gene Names: CENPLC1orf155ICEN33
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GTEx:  ENSG00000120334 
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UniProt GroupQ8N0S6
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein MF [auth M]180Homo sapiensMutation(s): 0 
Gene Names: CENPMC22orf18ICEN39PANE1
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GTEx:  ENSG00000100162 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein NG [auth N]339Homo sapiensMutation(s): 0 
Gene Names: CENPNC16orf60ICEN32BM-309
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Find proteins for Q96H22 (Homo sapiens)
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PHAROS:  Q96H22
GTEx:  ENSG00000166451 
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UniProt GroupQ96H22
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein OH [auth O]300Homo sapiensMutation(s): 0 
Gene Names: CENPOICEN36MCM21R
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Find proteins for Q9BU64 (Homo sapiens)
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GTEx:  ENSG00000138092 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein PI [auth P]288Homo sapiensMutation(s): 0 
Gene Names: CENPP
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Find proteins for Q6IPU0 (Homo sapiens)
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PHAROS:  Q6IPU0
GTEx:  ENSG00000188312 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein QJ [auth Q]268Homo sapiensMutation(s): 0 
Gene Names: CENPQC6orf139
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Find proteins for Q7L2Z9 (Homo sapiens)
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PHAROS:  Q7L2Z9
GTEx:  ENSG00000031691 
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UniProt GroupQ7L2Z9
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein UK [auth U]418Homo sapiensMutation(s): 0 
Gene Names: CENPUICEN24KLIP1MLF1IPPBIP1
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Find proteins for Q71F23 (Homo sapiens)
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PHAROS:  Q71F23
GTEx:  ENSG00000151725 
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UniProt GroupQ71F23
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein RL [auth R]177Homo sapiensMutation(s): 0 
Gene Names: ITGB3BPCENPRNRIF3
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Find proteins for Q13352 (Homo sapiens)
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GTEx:  ENSG00000142856 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein TM [auth T]561Homo sapiensMutation(s): 0 
Gene Names: CENPTC16orf56ICEN22
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GTEx:  ENSG00000102901 
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UniProt GroupQ96BT3
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein WN [auth W]88Homo sapiensMutation(s): 0 
Gene Names: CENPWC6orf173CUG2
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Find proteins for Q5EE01 (Homo sapiens)
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GTEx:  ENSG00000203760 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein SO [auth S]138Homo sapiensMutation(s): 0 
Gene Names: CENPSAPITD1FAAP16MHF1
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Find proteins for Q8N2Z9 (Homo sapiens)
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PHAROS:  Q8N2Z9
GTEx:  ENSG00000175279 
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UniProt GroupQ8N2Z9
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein XP [auth X]81Homo sapiensMutation(s): 0 
Gene Names: CENPXFAAP10MHF2STRA13
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Find proteins for A8MT69 (Homo sapiens)
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PHAROS:  A8MT69
GTEx:  ENSG00000169689 
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UniProt GroupA8MT69
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Entity ID: 3
MoleculeChains LengthOrganismImage
DNA (66-MER)C [auth J]53Homo sapiens
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Entity ID: 17
MoleculeChains LengthOrganismImage
DNA (66-MER)Q [auth i]53Homo sapiens
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.83 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Cancer Research UKUnited Kingdom--
Boehringer Ingelheim Fonds (BIF)Germany--
Medical Research Council (MRC, United Kingdom)United Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2022-04-27
    Type: Initial release
  • Version 1.1: 2022-06-01
    Changes: Database references