7QTR

GB1 in mammalian cells, 50 uM


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation   3D Report Full Report


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Literature

Protein structure determination in human cells by in-cell NMR and a reporter system to optimize protein delivery or transexpression.

Gerez, J.A.Prymaczok, N.C.Kadavath, H.Ghosh, D.Butikofer, M.Fleischmann, Y.Guntert, P.Riek, R.

(2022) Commun Biol 5: 1322-1322

  • DOI: https://doi.org/10.1038/s42003-022-04251-6
  • Primary Citation of Related Structures:  
    7QTR, 7QTS

  • PubMed Abstract: 

    Most experimental methods for structural biology proceed in vitro and therefore the contribution of the intracellular environment on protein structure and dynamics is absent. Studying proteins at atomic resolution in living mammalian cells has been elusive due to the lack of methodologies. In-cell nuclear magnetic resonance spectroscopy (in-cell NMR) is an emerging technique with the power to do so. Here, we improved current methods of in-cell NMR by the development of a reporter system that allows monitoring the delivery of exogenous proteins into mammalian cells, a process that we called here "transexpression". The reporter system was used to develop an efficient protocol for in-cell NMR which enables spectral acquisition with higher quality for both disordered and folded proteins. With this method, the 3D atomic resolution structure of the model protein GB1 in human cells was determined with a backbone root-mean-square deviation (RMSD) of 1.1 Å.


  • Organizational Affiliation

    Laboratory of Physical Chemistry, ETH Zürich, 8093, Zürich, Switzerland. juan.gerez@phys.chem.ethz.ch.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Immunoglobulin G-binding protein G57Streptococcus sp. 'group GMutation(s): 0 
Gene Names: spg
UniProt
Find proteins for P06654 (Streptococcus sp. group G)
Explore P06654 
Go to UniProtKB:  P06654
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP06654
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland--

Revision History  (Full details and data files)

  • Version 1.0: 2022-12-21
    Type: Initial release