7QPK | pdb_00007qpk

Structure of the A-region of Awp14 from Candida glabrata

• PDB DOI: https://doi.org/10.2210/pdb7QPK/pdb

• Classification: CELL ADHESION
• Organism(s): Nakaseomyces glabratus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2022-01-05 Released: 2023-01-18 
• Deposition Author(s): Essen, L.-O., Reithofer, V., de Groot, P.
• Funding Organization(s): German Research Foundation (DFG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.75 Å
• R-Value Free: 
  0.243 (Depositor), 0.221 (DCC) 
• R-Value Work: 
  0.178 (Depositor) 
• R-Value Observed: 
  0.181 (Depositor) 

Starting Model: in silico

Literature

Structure of the cluster III adhesin Awp14 from a clinical isolate of Candida glabrata

Reithofer, V., de Groot, P., Essen, L.-O.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 91.99 kDa 
• Atom Count: 6,126 
• Modeled Residue Count: 754 
• Deposited Residue Count: 826 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
A-region of Awp14	A, B	413	Nakaseomyces glabratus	Mutation(s): 0  Gene Names: AO440_000148
UniProt
Find proteins for A0A0W0CDE7 (Candida glabrata) Explore A0A0W0CDE7  Go to UniProtKB:  A0A0W0CDE7

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.75 Å
• R-Value Free:  0.243 (Depositor), 0.221 (DCC) 
• R-Value Work:  0.178 (Depositor) 
• R-Value Observed: 0.181 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.167	α = 90
b = 172.807	β = 90
c = 140.854	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2023-01-18 
Deposition Author(s): Essen, L.-O., Reithofer, V., de Groot, P.

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Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	SFB987

Revision History  

• Version 1.0: 2023-01-18
  Type: Initial release
  
• Version 1.1: 2024-05-01
  Changes: Data collection, Refinement description