Download MendeleyCARM1 Transition State Mimics
Marechal, N., Cura, V., Troffer-Charlier, N., Bonnefond, L., Cavarelli, J.To be published.
7QPH
Crystal structure of mouse CARM1 in complex with histone H3_22-31 K27 acetylated
- PDB DOI: https://doi.org/10.2210/pdb7QPH/pdb
- Classification: TRANSCRIPTION
- Organism(s): Mus musculus
- Expression System: Spodoptera aff. frugiperda 1 BOLD-2017
- Mutation(s): No
- Deposited: 2022-01-04 Released: 2023-01-18
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.210
- R-Value Work: 0.183
- R-Value Observed: 0.184
This is version 2.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Histone-arginine methyltransferase CARM1 | 361 | Mus musculus | Mutation(s): 0 Gene Names: Carm1, Prmt4 EC: 2.1.1.319 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9WVG6 (Mus musculus) Explore Q9WVG6 Go to UniProtKB: Q9WVG6 | |||||
IMPC: MGI:1913208 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9WVG6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Histone H3 22-31 K27 acetylated | E, F [auth H], G, H [auth F] | 10 | Mus musculus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P68433 (Mus musculus) Explore P68433 Go to UniProtKB: P68433 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P68433 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| QVR (Subject of Investigation/LOI) Query on QVR | J [auth E], K [auth H], L [auth G], M [auth F] | (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[(~{E})-prop-1-enyl]oxolane-3,4-diol C12 H15 N5 O3 UYHMWDPUDJRZGB-JVINVVEESA-N |  | ||
| EDO Query on EDO | I [auth D] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| ALY Query on ALY | E, F [auth H], G, H [auth F] | L-PEPTIDE LINKING | C8 H16 N2 O3 |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.210
- R-Value Work: 0.183
- R-Value Observed: 0.184
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 75.343 | α = 90 |
| b = 99.184 | β = 90 |
| c = 208.443 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| XDS | data scaling |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-01-18 Deposition Author(s): Marechal, N., Cura, V., Troffer-Charlier, N., Bonnefond, L., Cavarelli, J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-01-18
Type: Initial release - Version 2.0: 2023-11-15
Changes: Atomic model, Data collection - Version 2.1: 2024-01-31
Changes: Refinement description
