7Q63

The tandem SH2 domains of SYK

PDB DOI: https://doi.org/10.2210/pdb7Q63/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-11-05 Released: 2021-11-24
Deposition Author(s): Bradshaw, W.J., Katis, V.L., Chen, Z., Bountra, C., von Delft, F., Gileadi, O., Brennan, P.E.
Funding Organization(s): National Institutes of Health/National Institute on Aging (NIH/NIA)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.264
R-Value Work: 0.217

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

The tandem SH2 domains of SYK

Bradshaw, W.J., Katis, V.L., Chen, Z., Bountra, C., von Delft, F., Gileadi, O., Brennan, P.E.

To be published.

Macromolecule Content

Total Structure Weight: 90.45 kDa
Atom Count: 6,380
Modelled Residue Count: 743
Deposited Residue Count: 795
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tyrosine-protein kinase SYK	A [auth AAA], B [auth BBB], C [auth CCC]	265	Homo sapiens	Mutation(s): 0 Gene Names: SYK EC: 2.7.10.2
UniProt & NIH Common Fund Data Resources
Find proteins for P43405 (Homo sapiens) Explore P43405 Go to UniProtKB: P43405
PHAROS: P43405 GTEx: ENSG00000165025
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P43405
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PEG Query on PEG Download Ideal Coordinates CCD File SDF format, chain D [auth AAA] MOL2 format, chain D [auth AAA]	D [auth AAA]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain D [auth AAA] Interactions & Density Focus chain D [auth AAA]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain M [auth BBB] MOL2 format, chain M [auth BBB]	M [auth BBB]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain M [auth BBB] Interactions & Density Focus chain M [auth BBB]
SCN Query on SCN Download Ideal Coordinates CCD File SDF format, chain E [auth AAA] SDF format, chain F [auth AAA] SDF format, chain G [auth AAA] SDF format, chain I [auth BBB] SDF format, chain J [auth BBB] SDF format, chain K [auth BBB] SDF format, chain L [auth BBB] SDF format, chain N [auth CCC] SDF format, chain O [auth CCC] MOL2 format, chain E [auth AAA] MOL2 format, chain F [auth AAA] MOL2 format, chain G [auth AAA] MOL2 format, chain I [auth BBB] MOL2 format, chain J [auth BBB] MOL2 format, chain K [auth BBB] MOL2 format, chain L [auth BBB] MOL2 format, chain N [auth CCC] MOL2 format, chain O [auth CCC]	E [auth AAA] F [auth AAA] G [auth AAA] I [auth BBB] J [auth BBB] E [auth AAA], F [auth AAA], G [auth AAA], I [auth BBB], J [auth BBB], K [auth BBB], L [auth BBB], N [auth CCC], O [auth CCC]	THIOCYANATE ION C N S ZMZDMBWJUHKJPS-UHFFFAOYSA-M		Interactions Focus chain E [auth AAA] Focus chain F [auth AAA] Focus chain G [auth AAA] Focus chain I [auth BBB] Focus chain J [auth BBB] Focus chain K [auth BBB] Focus chain L [auth BBB] Focus chain N [auth CCC] Focus chain O [auth CCC] Interactions & Density Focus chain E [auth AAA] Focus chain F [auth AAA] Focus chain G [auth AAA] Focus chain I [auth BBB] Focus chain J [auth BBB] Focus chain K [auth BBB] Focus chain L [auth BBB] Focus chain N [auth CCC] Focus chain O [auth CCC]
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain H [auth AAA] MOL2 format, chain H [auth AAA]	H [auth AAA]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain H [auth AAA] Interactions & Density Focus chain H [auth AAA]