transcription factor CDX2 bound to hydroxymethylated DNA
Morgunova, E., Yin, Y., Popov, A., Taipale, J.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Homeobox protein CDX-2 | C [auth K], F [auth C] | 67 | Homo sapiens | Mutation(s): 0  Gene Names: CDX2, CDX3 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q99626 (Homo sapiens) Explore Q99626  Go to UniProtKB:  Q99626 | |||||
PHAROS:  Q99626 GTEx:  ENSG00000165556  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q99626 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (18-MER) | A, D [auth B] | 18 | Homo sapiens | ||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (18-MER) | B [auth D], E | 18 | Homo sapiens | ||
Sequence AnnotationsExpand | |||||
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Length ( Å ) | Angle ( ˚ ) |
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a = 69.897 | α = 90 |
b = 46.634 | β = 98.25 |
c = 120.048 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
Aimless | data scaling |
PDB_EXTRACT | data extraction |
XDS | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Not funded | -- |