Structure of CDX1 bound to hydroxymethylated DNA
Morgunova, E., Yin, Y., Popov, A., Taipale, J.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Homeobox protein CDX-1 | I [auth K], J [auth C], K [auth E], L [auth G] | 65 | Homo sapiens | Mutation(s): 0  Gene Names: CDX1 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P47902 (Homo sapiens) Explore P47902  Go to UniProtKB:  P47902 | |||||
PHAROS:  P47902 GTEx:  ENSG00000113722  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P47902 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 1 | |||||
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Molecule | Chains | Length | Organism | Image | |
hydroxymethylated DNA (18-MER) | A, C [auth B], E [auth D], G [auth F] | 18 | synthetic construct | ||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
hydroxymethylated DNA (18-MER) | B [auth H], D [auth I], F [auth J], H [auth L] | 18 | synthetic construct | ||
Sequence AnnotationsExpand | |||||
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Length ( Å ) | Angle ( ˚ ) |
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a = 45.373 | α = 112.37 |
b = 64.669 | β = 108.11 |
c = 67.028 | γ = 93.93 |
Software Name | Purpose |
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REFMAC | refinement |
Aimless | data scaling |
PDB_EXTRACT | data extraction |
XDS | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Not funded | -- |