Download MendeleyMutant D24G of uridine phosphorylase from E. coli
Polyakov, K., Safonova, T.To be published.
7Q31
Mutant D24G of uridine phosphorylase from E. coli
- PDB DOI: https://doi.org/10.2210/pdb7Q31/pdb
- Classification: TRANSFERASE
- Organism(s): Escherichia coli K-12
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2021-10-26 Released: 2022-04-06
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.218
- R-Value Work: 0.163
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uridine phosphorylase | A [auth AAA], B [auth BBB] | 250 | Escherichia coli K-12 | Mutation(s): 1 Gene Names: udp, b3831, JW3808 EC: 2.4.2.3 |  |
UniProt | |||||
Find proteins for P12758 (Escherichia coli (strain K12)) Explore P12758 Go to UniProtKB: P12758 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P12758 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 (Subject of Investigation/LOI) Query on SO4 | D [auth AAA], E [auth AAA], F [auth BBB], G [auth BBB] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL (Subject of Investigation/LOI) Query on GOL | H [auth BBB] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| K (Subject of Investigation/LOI) Query on K | C [auth AAA] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.218
- R-Value Work: 0.163
- Space Group: H 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 150.1 | α = 90 |
| b = 150.1 | β = 90 |
| c = 50.06 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-04-06 Deposition Author(s): Safonova, T., Polyakov, K.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | Russian Federation | -- |
Revision History (Full details and data files)
- Version 1.0: 2022-04-06
Type: Initial release - Version 1.1: 2024-01-31
Changes: Data collection, Derived calculations, Refinement description
