Download MendeleyHybrid form of uridine phosphorylase from E. coli and Salmonella typhimurium in the presence PEG
Polyakov, K., Safonova, T.To be published.
7Q1J
Hybrid form of uridine phosphorylase from E. coli and Salmonella typhimurium in the presence PEG
- PDB DOI: https://doi.org/10.2210/pdb7Q1J/pdb
- Classification: TRANSFERASE
- Organism(s): Escherichia coli MS 85-1
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2021-10-20 Released: 2022-04-06
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.71 Å
- R-Value Free: 0.281
- R-Value Work: 0.204
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uridine phosphorylase | A [auth AAA], B [auth BBB] | 250 | Escherichia coli MS 85-1 | Mutation(s): 0 Gene Names: udp, HMPREF9350_04039 EC: 2.4.2.3 |  |
UniProt | |||||
Find proteins for E6BNQ3 (Escherichia coli MS 85-1) Explore E6BNQ3 Go to UniProtKB: E6BNQ3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | E6BNQ3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FLC (Subject of Investigation/LOI) Query on FLC | D [auth AAA], E [auth BBB] | CITRATE ANION C6 H5 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-K |  | ||
| K (Subject of Investigation/LOI) Query on K | C [auth AAA] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.71 Å
- R-Value Free: 0.281
- R-Value Work: 0.204
- Space Group: H 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 150.59 | α = 90 |
| b = 150.59 | β = 90 |
| c = 46.29 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-04-06 Deposition Author(s): Safonova, T., Polyakov, K.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | Russian Federation | -- |
Revision History (Full details and data files)
- Version 1.0: 2022-04-06
Type: Initial release - Version 1.1: 2024-01-31
Changes: Data collection, Derived calculations, Refinement description
