7PEJ | pdb_00007pej

Crystal structure of Triosephosphate Isomerase from Schizosaccharomyces pombe (SpTIM wt)

PDB DOI: https://doi.org/10.2210/pdb7PEJ/pdb

Classification: ISOMERASE
Organism(s): Schizosaccharomyces pombe 972h-
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-08-10 Released: 2022-08-24
Deposition Author(s): Romero-Romero, S., Garza-Ramos, G.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.79 Å
R-Value Free:
0.218 (Depositor), 0.220 (DCC)
R-Value Work:
0.182 (Depositor), 0.180 (DCC)
R-Value Observed:
0.182 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Triosephosphate Isomerase from Schizosaccharomyces pombe (SpTIM wt)

Romero-Romero, S., Garza-Ramos, G.

To be published.

Macromolecule Content

Total Structure Weight: 109.33 kDa
Atom Count: 8,277
Modeled Residue Count: 980
Deposited Residue Count: 992
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Triosephosphate isomerase	A, B, C, D	248	Schizosaccharomyces pombe 972h-	Mutation(s): 0 Gene Names: tpi1, tpi, SPCC24B10.21 EC: 5.3.1.1
UniProt
Find proteins for P07669 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)) Explore P07669 Go to UniProtKB: P07669
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P07669
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain H [auth B] SDF format, chain I [auth B] SDF format, chain K [auth C] SDF format, chain N [auth D] MOL2 format, chain E [auth A] MOL2 format, chain H [auth B] MOL2 format, chain I [auth B] MOL2 format, chain K [auth C] MOL2 format, chain N [auth D] mmCIF format, chain E [auth A] mmCIF format, chain H [auth B] mmCIF format, chain I [auth B] mmCIF format, chain K [auth C] mmCIF format, chain N [auth D]	E [auth A], H [auth B], I [auth B], K [auth C], N [auth D]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain E [auth A] Focus chain H [auth B] Focus chain I [auth B] Focus chain K [auth C] Focus chain N [auth D] Interactions & Density Focus chain E [auth A] Focus chain H [auth B] Focus chain I [auth B] Focus chain K [auth C] Focus chain N [auth D]
PO4 Query on PO4 Download Ideal Coordinates CCD File SDF format, chain M [auth C] MOL2 format, chain M [auth C] mmCIF format, chain M [auth C]	M [auth C]	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Interactions Focus chain M [auth C] Interactions & Density Focus chain M [auth C]
ACT Query on ACT Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain G [auth A] SDF format, chain J [auth C] SDF format, chain L [auth C] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A] MOL2 format, chain J [auth C] MOL2 format, chain L [auth C] mmCIF format, chain F [auth A] mmCIF format, chain G [auth A] mmCIF format, chain J [auth C] mmCIF format, chain L [auth C]	F [auth A], G [auth A], J [auth C], L [auth C]	ACETATE ION C₂ H₃ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-M		Interactions Focus chain F [auth A] Focus chain G [auth A] Focus chain J [auth C] Focus chain L [auth C] Interactions & Density Focus chain F [auth A] Focus chain G [auth A] Focus chain J [auth C] Focus chain L [auth C]