7P23 | pdb_00007p23

Thaumatin-like protein of Puccinia graminis

PDB DOI: https://doi.org/10.2210/pdb7P23/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Puccinia graminis f. sp. tritici CRL 75-36-700-3
Expression System: Komagataella pastoris
Mutation(s): No

Deposited: 2021-07-03 Released: 2022-07-13
Deposition Author(s): Eder, M., Hofer, G., Odabas, M., Keller, W.
Funding Organization(s): Austrian Science Fund

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free:
0.189 (Depositor), 0.190 (DCC)
R-Value Work:
0.143 (Depositor), 0.140 (DCC)
R-Value Observed:
0.144 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

The structure of Thaumatin-like proteins of a bacterial, a fungal and an animal origin

Eder, M., Hofer, G., Odabas, M., Keller, W.

To be published.

Macromolecule Content

Total Structure Weight: 52.03 kDa
Atom Count: 4,281
Modeled Residue Count: 470
Deposited Residue Count: 480
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thaumatin-like protein of Puccinia graminis	A, B	240	Puccinia graminis f. sp. tritici CRL 75-36-700-3	Mutation(s): 0 Gene Names: PGTG_18309
UniProt
Find proteins for E3L7F9 (Puccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / race SCCL)) Explore E3L7F9 Go to UniProtKB: E3L7F9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	E3L7F9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NA Query on NA Download Ideal Coordinates CCD File SDF format, chain C [auth B] MOL2 format, chain C [auth B] mmCIF format, chain C [auth B]	C [auth B]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain C [auth B] Interactions & Density Focus chain C [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.189 (Depositor), 0.190 (DCC)
R-Value Work: 0.143 (Depositor), 0.140 (DCC)
R-Value Observed: 0.144 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.14	α = 90
b = 77.523	β = 90
c = 143.896	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XSCALE	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2022-07-13

Deposition Author(s):

Funding Organization	Location	Grant Number
Austrian Science Fund	Austria	F 4604-B19

Revision History (Full details and data files)

Version 1.0: 2022-07-13
Type: Initial release
Version 1.1: 2024-01-31
Changes: Data collection, Refinement description
Version 1.2: 2024-11-20
Changes: Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.