7OJ5

Cryo-EM structure of Medicago truncatula HISN5 protein

PDB DOI: https://doi.org/10.2210/pdb7OJ5/pdb
EM Map EMD-12938: EMDB EMDataResource

Classification: LYASE
Organism(s): Medicago truncatula
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-05-13 Released: 2021-06-02
Deposition Author(s): Ruszkowski, M., Witek, W.
Funding Organization(s): Polish National Science Centre

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.40 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM and crystal structures of a herbicide development target, HISN5

Witek, W., Ruszkowski, M.

To be published.

Macromolecule Content

Total Structure Weight: 547.26 kDa
Atom Count: 35,323
Modelled Residue Count: 4,416
Deposited Residue Count: 4,968
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Imidazoleglycerol-phosphate dehydratase	A B C D E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y]	207	Medicago truncatula	Mutation(s): 0 EC: 4.2.1.19
UniProt
Find proteins for A0A072VQG6 (Medicago truncatula) Explore A0A072VQG6 Go to UniProtKB: A0A072VQG6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A072VQG6
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MN Query on MN Download Ideal Coordinates CCD File SDF format, chain AA [auth B] SDF format, chain AB [auth O] SDF format, chain BA [auth B] SDF format, chain BB [auth O] SDF format, chain CA [auth C] SDF format, chain CB [auth P] SDF format, chain DA [auth C] SDF format, chain DB [auth P] SDF format, chain EA [auth D] SDF format, chain EB [auth Q] SDF format, chain FA [auth D] SDF format, chain FB [auth Q] SDF format, chain GA [auth E] SDF format, chain GB [auth R] SDF format, chain HA [auth E] SDF format, chain HB [auth R] SDF format, chain IA [auth F] SDF format, chain IB [auth S] SDF format, chain JA [auth F] SDF format, chain JB [auth S] SDF format, chain KA [auth G] SDF format, chain KB [auth T] SDF format, chain LA [auth G] SDF format, chain LB [auth T] SDF format, chain MA [auth H] SDF format, chain MB [auth V] SDF format, chain NA [auth H] SDF format, chain NB [auth V] SDF format, chain OA [auth I] SDF format, chain OB [auth W] SDF format, chain PA [auth I] SDF format, chain PB [auth W] SDF format, chain QA [auth J] SDF format, chain QB [auth X] SDF format, chain RA [auth J] SDF format, chain RB [auth X] SDF format, chain SA [auth K] SDF format, chain SB [auth Y] SDF format, chain TA [auth K] SDF format, chain TB [auth Y] SDF format, chain UA [auth L] SDF format, chain VA [auth L] SDF format, chain WA [auth M] SDF format, chain XA [auth M] SDF format, chain Y [auth A] SDF format, chain YA [auth N] SDF format, chain Z [auth A] SDF format, chain ZA [auth N] MOL2 format, chain AA [auth B] MOL2 format, chain AB [auth O] MOL2 format, chain BA [auth B] MOL2 format, chain BB [auth O] MOL2 format, chain CA [auth C] MOL2 format, chain CB [auth P] MOL2 format, chain DA [auth C] MOL2 format, chain DB [auth P] MOL2 format, chain EA [auth D] MOL2 format, chain EB [auth Q] MOL2 format, chain FA [auth D] MOL2 format, chain FB [auth Q] MOL2 format, chain GA [auth E] MOL2 format, chain GB [auth R] MOL2 format, chain HA [auth E] MOL2 format, chain HB [auth R] MOL2 format, chain IA [auth F] MOL2 format, chain IB [auth S] MOL2 format, chain JA [auth F] MOL2 format, chain JB [auth S] MOL2 format, chain KA [auth G] MOL2 format, chain KB [auth T] MOL2 format, chain LA [auth G] MOL2 format, chain LB [auth T] MOL2 format, chain MA [auth H] MOL2 format, chain MB [auth V] MOL2 format, chain NA [auth H] MOL2 format, chain NB [auth V] MOL2 format, chain OA [auth I] MOL2 format, chain OB [auth W] MOL2 format, chain PA [auth I] MOL2 format, chain PB [auth W] MOL2 format, chain QA [auth J] MOL2 format, chain QB [auth X] MOL2 format, chain RA [auth J] MOL2 format, chain RB [auth X] MOL2 format, chain SA [auth K] MOL2 format, chain SB [auth Y] MOL2 format, chain TA [auth K] MOL2 format, chain TB [auth Y] MOL2 format, chain UA [auth L] MOL2 format, chain VA [auth L] MOL2 format, chain WA [auth M] MOL2 format, chain XA [auth M] MOL2 format, chain Y [auth A] MOL2 format, chain YA [auth N] MOL2 format, chain Z [auth A] MOL2 format, chain ZA [auth N]	AA [auth B] AB [auth O] BA [auth B] BB [auth O] CA [auth C] AA [auth B], AB [auth O], BA [auth B], BB [auth O], CA [auth C], CB [auth P], DA [auth C], DB [auth P], EA [auth D], EB [auth Q], FA [auth D], FB [auth Q], GA [auth E], GB [auth R], HA [auth E], HB [auth R], IA [auth F], IB [auth S], JA [auth F], JB [auth S], KA [auth G], KB [auth T], LA [auth G], LB [auth T], MA [auth H], MB [auth V], NA [auth H], NB [auth V], OA [auth I], OB [auth W], PA [auth I], PB [auth W], QA [auth J], QB [auth X], RA [auth J], RB [auth X], SA [auth K], SB [auth Y], TA [auth K], TB [auth Y], UA [auth L], VA [auth L], WA [auth M], XA [auth M], Y [auth A], YA [auth N], Z [auth A], ZA [auth N]	MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N		Interactions Focus chain AA [auth B] Focus chain AB [auth O] Focus chain BA [auth B] Focus chain BB [auth O] Focus chain CA [auth C] Focus chain CB [auth P] Focus chain DA [auth C] Focus chain DB [auth P] Focus chain EA [auth D] Focus chain EB [auth Q] Focus chain FA [auth D] Focus chain FB [auth Q] Focus chain GA [auth E] Focus chain GB [auth R] Focus chain HA [auth E] Focus chain HB [auth R] Focus chain IA [auth F] Focus chain IB [auth S] Focus chain JA [auth F] Focus chain JB [auth S] Focus chain KA [auth G] Focus chain KB [auth T] Focus chain LA [auth G] Focus chain LB [auth T] Focus chain MA [auth H] Focus chain MB [auth V] Focus chain NA [auth H] Focus chain NB [auth V] Focus chain OA [auth I] Focus chain OB [auth W] Focus chain PA [auth I] Focus chain PB [auth W] Focus chain QA [auth J] Focus chain QB [auth X] Focus chain RA [auth J] Focus chain RB [auth X] Focus chain SA [auth K] Focus chain SB [auth Y] Focus chain TA [auth K] Focus chain TB [auth Y] Focus chain UA [auth L] Focus chain VA [auth L] Focus chain WA [auth M] Focus chain XA [auth M] Focus chain Y [auth A] Focus chain YA [auth N] Focus chain Z [auth A] Focus chain ZA [auth N] Interactions & Density Focus chain AA [auth B] Focus chain AB [auth O] Focus chain BA [auth B] Focus chain BB [auth O] Focus chain CA [auth C] Focus chain CB [auth P] Focus chain DA [auth C] Focus chain DB [auth P] Focus chain EA [auth D] Focus chain EB [auth Q] Focus chain FA [auth D] Focus chain FB [auth Q] Focus chain GA [auth E] Focus chain GB [auth R] Focus chain HA [auth E] Focus chain HB [auth R] Focus chain IA [auth F] Focus chain IB [auth S] Focus chain JA [auth F] Focus chain JB [auth S] Focus chain KA [auth G] Focus chain KB [auth T] Focus chain LA [auth G] Focus chain LB [auth T] Focus chain MA [auth H] Focus chain MB [auth V] Focus chain NA [auth H] Focus chain NB [auth V] Focus chain OA [auth I] Focus chain OB [auth W] Focus chain PA [auth I] Focus chain PB [auth W] Focus chain QA [auth J] Focus chain QB [auth X] Focus chain RA [auth J] Focus chain RB [auth X] Focus chain SA [auth K] Focus chain SB [auth Y] Focus chain TA [auth K] Focus chain TB [auth Y] Focus chain UA [auth L] Focus chain VA [auth L] Focus chain WA [auth M] Focus chain XA [auth M] Focus chain Y [auth A] Focus chain YA [auth N] Focus chain Z [auth A] Focus chain ZA [auth N]