7OIF

CspA-27 cotranslational folding intermediate 2


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

A switch from alpha-helical to beta-strand conformation during co-translational protein folding.

Agirrezabala, X.Samatova, E.Macher, M.Liutkute, M.Maiti, M.Gil-Carton, D.Novacek, J.Valle, M.Rodnina, M.V.

(2022) EMBO J 41: e109175-e109175

  • DOI: 10.15252/embj.2021109175
  • Primary Citation of Related Structures:  
    7NWW, 7OIF, 7OIG, 7OII, 7OT5

  • PubMed Abstract: 
  • Cellular proteins begin to fold as they emerge from the ribosome. The folding landscape of nascent chains is not only shaped by their amino acid sequence but also by the interactions with the ribosome. Here, we combine biophysical methods with cryo-EM structure determination to show that folding of a β-barrel protein begins with formation of a dynamic α-helix inside the ribosome ...

    Cellular proteins begin to fold as they emerge from the ribosome. The folding landscape of nascent chains is not only shaped by their amino acid sequence but also by the interactions with the ribosome. Here, we combine biophysical methods with cryo-EM structure determination to show that folding of a β-barrel protein begins with formation of a dynamic α-helix inside the ribosome. As the growing peptide reaches the end of the tunnel, the N-terminal part of the nascent chain refolds to a β-hairpin structure that remains dynamic until its release from the ribosome. Contacts with the ribosome and structure of the peptidyl transferase center depend on nascent chain conformation. These results indicate that proteins may start out as α-helices inside the tunnel and switch into their native folds only as they emerge from the ribosome. Moreover, the correlation of nascent chain conformations with reorientation of key residues of the ribosomal peptidyl-transferase center suggest that protein folding could modulate ribosome activity.


    Organizational Affiliation

    Department of Physical Biochemistry, Max Planck Institute for Biophysical Chemistry, Gottingen, Germany.



Macromolecules

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Entity ID: 5
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50S ribosomal protein L2E [auth C]271Escherichia coliMutation(s): 0 
Gene Names: rplB
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Entity ID: 6
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50S ribosomal protein L3F [auth D]209Escherichia coliMutation(s): 0 
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Entity ID: 7
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50S ribosomal protein L4G [auth E]201Escherichia coliMutation(s): 0 
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Entity ID: 8
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50S ribosomal protein L5H [auth F]177Escherichia coliMutation(s): 0 
Gene Names: rplE
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Entity ID: 9
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50S ribosomal protein L6I [auth G]175Escherichia coli LAU-EC10Mutation(s): 0 
Gene Names: rplFV415_19070
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Entity ID: 10
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50S ribosomal protein L9J [auth H]149Escherichia coliMutation(s): 0 
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Entity ID: 11
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50S ribosomal protein L13K [auth I]142Escherichia coliMutation(s): 0 
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Entity ID: 12
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50S ribosomal protein L14L [auth J]123Escherichia coliMutation(s): 0 
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Entity ID: 13
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50S ribosomal protein L15M [auth K]144Escherichia coliMutation(s): 0 
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Entity ID: 14
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50S ribosomal protein L16N [auth L]136Escherichia coliMutation(s): 0 
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Entity ID: 15
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50S ribosomal protein L17O [auth M]119Escherichia coli M114Mutation(s): 0 
Gene Names: rplQERYG_01882
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Entity ID: 16
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50S ribosomal protein L18P [auth N]116Escherichia coliMutation(s): 0 
Gene Names: rplR
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Entity ID: 17
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50S ribosomal protein L19Q [auth O]114Escherichia coliMutation(s): 0 
Gene Names: rplS
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Entity ID: 18
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50S ribosomal protein L20R [auth P]117Escherichia coliMutation(s): 0 
Gene Names: rplT
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Entity ID: 19
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50S ribosomal protein L21S [auth Q]103Escherichia coliMutation(s): 0 
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Entity ID: 20
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50S ribosomal protein L22T [auth R]110Escherichia coliMutation(s): 0 
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Entity ID: 21
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50S ribosomal protein L23U [auth S]94Escherichia coli KTE73Mutation(s): 0 
Gene Names: rplWA1UI_03591
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Entity ID: 22
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50S ribosomal protein L24V [auth T]103Escherichia coli H736Mutation(s): 0 
Gene Names: rplXECHG_03175
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Entity ID: 23
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50S ribosomal protein L25W [auth U]94Escherichia coliMutation(s): 0 
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Entity ID: 24
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50S ribosomal protein L27X [auth V]80Escherichia coli 2.3916Mutation(s): 0 
Gene Names: rpmAEC23916_1043
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Entity ID: 25
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50S ribosomal protein L28Y [auth W]77Escherichia coliMutation(s): 0 
Gene Names: rpmB
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Entity ID: 26
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50S ribosomal protein L29Z [auth X]62Escherichia coli 2.3916Mutation(s): 0 
Gene Names: rpmCEC23916_1173
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Entity ID: 27
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50S ribosomal protein L30AA [auth Y]58Escherichia coliMutation(s): 0 
Gene Names: rpmD
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Entity ID: 28
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50S ribosomal protein L31BA [auth Z]66Escherichia coli O145:NMMutation(s): 0 
Gene Names: rpmECCU01_028900
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Entity ID: 29
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50S ribosomal protein L32CA [auth a]56Escherichia coli DEC1DMutation(s): 0 
Gene Names: rpmFECDEC1D_1598
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Entity ID: 30
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50S ribosomal protein L33DA [auth b]52Escherichia coli TA447Mutation(s): 0 
Gene Names: rpmGECXG_02476
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Entity ID: 31
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50S ribosomal protein L34EA [auth c]46Escherichia coliMutation(s): 0 
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Entity ID: 32
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50S ribosomal protein L35FA [auth d]64Escherichia coli 99.0741Mutation(s): 0 
Gene Names: rpmIEC970259_2017
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Entity ID: 33
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50S ribosomal protein L36GA [auth e]38Escherichia coliMutation(s): 0 
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Entity ID: 34
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30S ribosomal protein S2HA [auth f]225Escherichia coliMutation(s): 0 
Gene Names: rpsBD9J46_02895
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Entity ID: 35
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30S ribosomal protein S3IA [auth g]208Escherichia coliMutation(s): 0 
Gene Names: rpsCG4V09_06545NCTC9094_00425
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Entity ID: 36
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30S ribosomal protein S4JA [auth h]205Escherichia coliMutation(s): 0 
Gene Names: rpsD
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Entity ID: 37
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30S ribosomal protein S5KA [auth i]156Escherichia coli UMEA 3718-1Mutation(s): 0 
Gene Names: rpsEG994_03521
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Entity ID: 38
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30S ribosomal protein S6LA [auth j]104Escherichia coliMutation(s): 0 
Gene Names: D9J60_11985
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Entity ID: 39
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30S ribosomal protein S7MA [auth k]151Escherichia coliMutation(s): 0 
Gene Names: rpsG
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Entity ID: 40
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30S ribosomal protein S8NA [auth l]129Escherichia coliMutation(s): 0 
Gene Names: rpsH
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Entity ID: 41
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30S ribosomal protein S9OA [auth m]127Escherichia coliMutation(s): 0 
Gene Names: rpsI
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Entity ID: 42
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30S ribosomal protein S10PA [auth n]99Escherichia coli 2-427-07_S4_C3Mutation(s): 0 
Gene Names: rpsJAD31_3986
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Entity ID: 43
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30S ribosomal protein S11QA [auth o]117Escherichia coliMutation(s): 0 
Gene Names: rpsK
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Entity ID: 44
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30S ribosomal protein S12RA [auth p]123Escherichia coli 99.0741Mutation(s): 0 
Gene Names: rpsLEC970259_3994
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Entity ID: 45
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30S ribosomal protein S13SA [auth q]116Escherichia coli 2.3916Mutation(s): 0 
Gene Names: rpsMEC23916_1158
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Entity ID: 46
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30S ribosomal protein S14TA [auth r]100Escherichia coliMutation(s): 0 
Gene Names: rpsN
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Entity ID: 47
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30S ribosomal protein S15UA [auth s]88Escherichia coliMutation(s): 0 
Gene Names: rpsO
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Entity ID: 48
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30S ribosomal protein S16VA [auth t]82Escherichia coliMutation(s): 0 
Gene Names: 
rpsPA2F99_002454A5U30_004754A6519_004615A6583_20940A6592_26300A8C65_15700A8W81_003242A8X14_004155A8X68_004563A9819_15045A9X72_06320AAG43_004020AAG80_003010AAG81_003518ABE90_010975ABT96_004672ACN68_31505ACN81_10155ACU57_00080ACW72_004544ADS93_003497AM270_24125AM340_13500AM464_04895AMK64_003988AML23_12190AO169_004398APX88_27010AT335_003951AT845_003865AUQ29_11475AW059_25200AW086_25030AW118_18435AWP47_02660AZZ83_004770B2D52_004761B5N24_004711B6L15_004734B6R12_002466B6R15_004151B6R17_002001B6R27_002800B6R48_002091B6R87_001657B7C15_004400B9T59_20695BANRA_01153BANRA_03473BANRA_03696BANRA_04468BB545_02595BE930_26320BE963_28865BER14_21265BF271_003587BF481_004883BFL24_18650BG821_003122BG944_004814BH692_16380BHF52_23980BHS81_15865BHS87_14760BIQ87_15105BJI68_05000BJJ90_06195BK272_24720BK292_15140BK373_16555BK375_12700BKD45_004485BM922_004310BMC34_003927BMC79_003964BMR21_18000BMT49_16600BMT50_17425BMT91_21005BN17_24641BO068_004348BO178_003470BOB65_003879BOH76_22900BON63_09345BON65_11215BON66_27890BON70_23545BON72_09640BON73_11900BON76_11245BON83_27365BON86_18235BON87_20630BON91_19540BON92_12360BON93_01410BON94_21740BON95_04420BON96_24655BON98_25425BOY03_003060BR158_004436BTQ06_08500BUE81_23775BUE82_05185BvCms2454_01380BvCmsC61A_01924BvCmsHHP019_05235BvCmsHHP056_00209BvCmsKKP005_03701BvCmsKKP036_03830BvCmsKKP057_04751BvCmsKKP061_02398BvCmsKSNP073_03617BvCmsKSP011_03563BvCmsKSP067_01559BvCmsKSP076_04166BvCmsNSNP036_05076BvCmsSIP024_02577BvCmsSIP082_03987BVL39_13730BWI89_00150BXT93_09655BZL69_25760C2121_004291C2M16_24775C2U48_20990C3F40_23855C4952_001399C4M78_00095C5542_003471C5715_03485C5F72_06740C5N07_05435C5Y87_15585C6B13_04095C6B22_10580C6L19_004166C6N50_004157C7B02_26315C9114_19790C9160_23660C9E67_07005C9Z43_20325C9Z62_24480C9Z68_21275CA593_13735CBT22_004595CCS08_06505CCV12_004414CCV24_000017CCZ91_004670CD42_001321CDC27_13845CDL36_11160CDL37_18055CDL57_16465CF32_004637CG692_20885CG831_003788CIG67_05880CLG78_004553CN875_003559CO706_10965COD50_25345CQB02_03730CQP61_07585CR539_18075CS116_004494CSE52_003854CT143_10335CV83915_03504CWS33_25635CX692_002455CX693_002493CX694_004518CX699_002389CXJ73_004003CY655_16900CYM75_004436D0X26_16000D1912_07685D2183_20635D3822_24890D3C88_03060D3G36_24900D3O91_09285D3Y67_05870D4U49_19605D4V09_19355D5H22_24990D6T60_25025D9D31_00780D9D43_23095D9D77_22380D9E34_03925D9E49_21005D9F92_15385D9H13_21105D9H94_19445D9J03_06395D9J11_23055D9J61_07050D9K17_14945DAH18_25935DAH23_04345DAH34_10330DAH37_14005DAH50_19565DB282_24295DD762_23905DEN86_24870DEN89_05290DEN95_24210DEO15_25105DIV22_27270DL654_22785DLW88_18555DLX40_23340DM968_23855DN627_24570DNQ45_01400DNX30_24590DP258_24115DRW19_24340DS732_19205DS966_05305DTL43_21645DTL90_01960DTM10_03040DTM45_22285DU321_24440DXB10_19985DXT69_23545DXT71_24465DXT73_12420E0I42_22385E0N24_22770E0P28_20600E2112_19830E2119_20985E2123_21395E2127_22415E2128_19340E2129_22175E2135_13960E3N34_21500E4K51_10645E4K54_11210E5S34_21020E5S35_14660E5S38_04730E5S43_09635E5S47_22625E5S52_22715E5S61_22870E5S62_22610EA239_21705EA435_12015EAI46_08750EAI46_19150EAN77_19915EAX79_24130EBP16_16710EC1094V2_1064EC3234A_46c00160EC95NR1_01837ECs3472ED648_20865EGC08_24385EH88_004674EHD79_23055EHH55_21560EI021_11540EI041_15040EIA08_06550EIA13_20520EIZ93_15670EKI52_21690EL79_1054EL80_1056ELT17_17895ELT21_20810ELT29_11835ELT31_22870ELT33_23695ELT48_16600ELT49_07930ELT58_22055ELT72_08020ELU83_10535ELU85_06485ELU95_22115ELV08_18195ELV10_19885ELV13_15235ELV15_18730ELV22_19420ELV24_19395ELV28_21965ELX56_06875ELX68_02200ELX69_20260ELX70_09955ELX76_05035ELX79_13260ELX83_14075ELX96_15910ELY05_19155ELY23_10780ELY24_26090ELY32_24100ELY41_17475ELY48_09380ELY50_04680EO241_16375EPS76_07525EQO00_06525ERS085358_04425ERS085366_03876ERS085386_04745ERS085406_03870ERS085411_03453ERS139208_04590Esc0902E_28200ETECE1373_01211ETECE36_01887ETECE925_01207EVY14_20130EWK56_06055ExPECSC038_01348EXX13_06640EXX79_03590EYX47_22915EYX55_20965EYY34_19485F2N27_01665F2N28_00335F2N31_16490F3N40_18750F6U69_12510F7F11_01840F9386_02320F9400_21905F9407_18970F9571_00085F9B07_09610F9S76_24825F9S83_23540F9V07_12885F9V22_11915F9V24_18860F9X20_023410F9X20_23665FA849_11205FA868_10480FC554_21110FDM60_16720FE587_24310FEJ01_23140FEL34_03675FFF58_17240FGG80_17355FGY90_15115FHD44_22065FHR00_20565FJQ51_15255FKO60_26240FMP09_17785FNJ67_07070FOI11_00085FOI11_023095FPI65_16330FPS82_22910FQ021_22480FQE77_16995FQF29_21240FV293_24795FVB16_19505FWK02_06545FY127_18650FZC17_17165FZN26_24030FZN30_16975FZN31_06455G3565_24440G3813_003881G4A38_21035G5603_07605G5632_19875G5696_21375G6P89_06255G6Z99_06215G7635_004126G9448_20690GAJ26_21000GBE29_20070GF147_21710GF199_14515GF646_22585GF698_15985GF699_15750GFY34_20955GFY48_19980GFZ60_23130GGB84_004394GIB53_18000GJ11_16930GKE84_13400GKF52_20700GKF86_21845GKF89_16400GKG12_20785GKZ24_08615GLW94_12945GNO40_20570GNZ05_25610GOP20_19075GP650_18610GP662_21230GP711_05970GP946_22945GP979_11870GQE42_19695GQE64_16235GQE87_21465GQF58_23405GQF59_23600GQM04_19120GQM06_08835GQM09_18705GQM10_20810GQM13_06275GQR15_19760GQW07_17160GQW68_16490GQW76_15680GQW80_08175GRC73_20430GRO95_16520GRQ19_20860GRW05_07330GRW57_20065GRW80_11010GRW81_21890GSY44_20545GTP88_22980GUB08_21790GUB92_19220GUC01_18090GUI33_06345GW978_19230GXU05_003270GXV26_001949H0O53_05405H0O72_19850H4P47_06140H4P50_05665H4P51_05710H5C78_17045HCF72_003573HH411_000991HH795_003408HHG09_002093HHH44_004385HI055_003780HIE29_001459HIE44_004888HIF90_004305HIN64_004362HIO80_004061HIR12_004800HIT56_003652HJM92_003040HJN04_003990HJO75_003217HJQ60_000018HJS37_004785HJS41_004872HJU54_004369HKA49_004932HL425_18235HL563_11645HL601_19125HLU10_22115HLU56_02250HLV18_00065HLZ20_23975HLZ50_20265HmCms169_01598HmCms184_02991HmCmsJML074_04329HMJ82_09755HMS79_12530HMT08_11050HMU06_02425HMU48_25060HMV41_20415HMV95_03235HMW38_22070HNC30_23635HNC36_22715HNC38_21810HNC52_09635HNC59_00085HNC66_23815HNC75_22995HNC99_18325HND12_25480HND24_19775HNO08_19675HNV65_22995HNV94_20820HNY50_20135HNY54_20940HV109_05690HV146_17510HVV39_05045HVV53_10200HVW04_21985HVW11_17265HVW22_13655HVW43_23290HVX16_06350HVX31_05290HVX32_15575HVY77_06760HVZ29_15670HVZ30_05290HVZ33_05925HVZ71_06105HX136_05740HZ71_004194HZ72_004767I6H00_24675I6H01_07040I6H02_08660IA00_004589JE86ST02C_30890JE86ST05C_30940MJ49_17850MS7163_02744NCTC10082_03675NCTC10089_01224NCTC10090_04290NCTC10418_01999NCTC10429_01986NCTC10764_00466NCTC10767_02511NCTC10865_01552NCTC10974_01459NCTC11022_02695NCTC11112_07458NCTC11126_05241NCTC11181_03429NCTC11341_01001NCTC12950_01403NCTC13148_02463NCTC13216_00682NCTC4450_03193NCTC7922_00783NCTC7927_01359NCTC8008_00657NCTC8009_02720NCTC8179_06855NCTC8450_05829NCTC8500_01313NCTC8959_02554NCTC8960_03978NCTC8985_06048NCTC9036_01331NCTC9044_00378NCTC9045_01451NCTC9048_01312NCTC9050_04014NCTC9073_04663NCTC9075_01815NCTC9077_01607NCTC9081_05689NCTC9111_01671NCTC9434_01202NCTC9702_01486NCTC9703_05790NCTC9706_03497NCTC9775_05056NCTC9777_04825NCTC9962_00822NCTC9969_01448ND22_004869PGD_04459PU06_25435RG28_08790SAMEA3472043_01116SAMEA3472044_03967SAMEA3472056_03346SAMEA3472064_02234SAMEA3472080_02257SAMEA3472112_00948SAMEA3472117_02015SAMEA3472120_01859SAMEA3484427_01962SAMEA3484429_01824SAMEA3485101_02397SAMEA3485110_00013SAMEA3751407_03389SAMEA3752312_01514SAMEA3752386_03187SAMEA3752557_04552SAMEA3753064_04826SAMEA3753290_05484SAMEA3753300_03651SM09_02769THOESC010_11510TUM18780_10930UN91_00995WP2S18E08_12460WP4S18E07_11880WP4S18E08_11510WQ89_15945WR15_13330

UniProt
Find proteins for C3SYP2 (Escherichia coli)
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UniProt GroupC3SYP2
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Entity ID: 49
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S17WA [auth u]80Escherichia coliMutation(s): 0 
Gene Names: rpsQ
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Entity ID: 50
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S18XA [auth v]66Escherichia coliMutation(s): 0 
Gene Names: rpsR
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Entity ID: 51
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S19YA [auth w]83Escherichia coli H591Mutation(s): 0 
Gene Names: rpsSECPG_02636
UniProt
Find proteins for F4VJV7 (Escherichia coli H591)
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Entity ID: 52
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S20ZA [auth x]86Escherichia coliMutation(s): 0 
Gene Names: rpsT
UniProt
Find proteins for I4T5W9 (Escherichia coli 541-15)
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Entity ID: 53
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S21AB [auth y]70Escherichia coliMutation(s): 0 
Gene Names: rpsU
UniProt
Find proteins for E9TH65 (Escherichia coli MS 117-3)
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Entity ID: 55
MoleculeChainsSequence LengthOrganismDetailsImage
CspA transcriptional activatorCB [auth B]27Escherichia coli DEC1BMutation(s): 0 
Gene Names: cspAECDEC1B_4216
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Entity ID: 1
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23S rRNAA [auth 1]2903Escherichia coli
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Entity ID: 2
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16S rRNAB [auth 2]1534Escherichia coli
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Entity ID: 3
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5S rRNAC [auth 3]120Escherichia coli
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Entity ID: 4
MoleculeChainsLengthOrganismImage
mRNAD [auth 4]6Escherichia coli
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Entity ID: 54
MoleculeChainsLengthOrganismImage
tRNA-SerBB [auth z]88Escherichia coli
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Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download Ideal Coordinates CCD File 
WQ [auth Z],
ZQ [auth e]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download Ideal Coordinates CCD File 
AC [auth 1],
AD [auth 1],
AE [auth 1],
AF [auth 1],
AG [auth 1],
AC [auth 1],
AD [auth 1],
AE [auth 1],
AF [auth 1],
AG [auth 1],
AH [auth 1],
AI [auth 1],
AJ [auth 1],
AK [auth 1],
AL [auth 1],
AM [auth 2],
AN [auth 2],
AO [auth 2],
AP [auth 2],
AQ [auth 2],
AR [auth h],
BC [auth 1],
BD [auth 1],
BE [auth 1],
BF [auth 1],
BG [auth 1],
BH [auth 1],
BI [auth 1],
BJ [auth 1],
BK [auth 1],
BL [auth 1],
BM [auth 2],
BN [auth 2],
BO [auth 2],
BP [auth 2],
BQ [auth 2],
BR [auth q],
CC [auth 1],
CD [auth 1],
CE [auth 1],
CF [auth 1],
CG [auth 1],
CH [auth 1],
CI [auth 1],
CJ [auth 1],
CK [auth 1],
CL [auth 1],
CM [auth 2],
CN [auth 2],
CO [auth 2],
CP [auth 2],
CQ [auth 2],
CR [auth r],
DB [auth 1],
DC [auth 1],
DD [auth 1],
DE [auth 1],
DF [auth 1],
DG [auth 1],
DH [auth 1],
DI [auth 1],
DJ [auth 1],
DK [auth 1],
DL [auth 1],
DM [auth 2],
DN [auth 2],
DO [auth 2],
DP [auth 2],
DQ [auth 2],
DR [auth z],
EB [auth 1],
EC [auth 1],
ED [auth 1],
EE [auth 1],
EF [auth 1],
EG [auth 1],
EH [auth 1],
EI [auth 1],
EJ [auth 1],
EK [auth 1],
EL [auth 1],
EM [auth 2],
EN [auth 2],
EO [auth 2],
EP [auth 2],
EQ [auth 2],
ER [auth z],
FB [auth 1],
FC [auth 1],
FD [auth 1],
FE [auth 1],
FF [auth 1],
FG [auth 1],
FH [auth 1],
FI [auth 1],
FJ [auth 1],
FK [auth 1],
FL [auth 1],
FM [auth 2],
FN [auth 2],
FO [auth 2],
FP [auth 2],
FQ [auth 2],
GB [auth 1],
GC [auth 1],
GD [auth 1],
GE [auth 1],
GF [auth 1],
GG [auth 1],
GH [auth 1],
GI [auth 1],
GJ [auth 1],
GK [auth 1],
GL [auth 1],
GM [auth 2],
GN [auth 2],
GO [auth 2],
GP [auth 2],
GQ [auth 2],
HB [auth 1],
HC [auth 1],
HD [auth 1],
HE [auth 1],
HF [auth 1],
HG [auth 1],
HH [auth 1],
HI [auth 1],
HJ [auth 1],
HK [auth 1],
HL [auth 1],
HM [auth 2],
HN [auth 2],
HO [auth 2],
HP [auth 2],
HQ [auth 2],
IB [auth 1],
IC [auth 1],
ID [auth 1],
IE [auth 1],
IF [auth 1],
IG [auth 1],
IH [auth 1],
II [auth 1],
IJ [auth 1],
IK [auth 1],
IL [auth 1],
IM [auth 2],
IN [auth 2],
IO [auth 2],
IP [auth 2],
IQ [auth 3],
JB [auth 1],
JC [auth 1],
JD [auth 1],
JE [auth 1],
JF [auth 1],
JG [auth 1],
JH [auth 1],
JI [auth 1],
JJ [auth 1],
JK [auth 1],
JL [auth 1],
JM [auth 2],
JN [auth 2],
JO [auth 2],
JP [auth 2],
JQ [auth 3],
KB [auth 1],
KC [auth 1],
KD [auth 1],
KE [auth 1],
KF [auth 1],
KG [auth 1],
KH [auth 1],
KI [auth 1],
KJ [auth 1],
KK [auth 1],
KL [auth 1],
KM [auth 2],
KN [auth 2],
KO [auth 2],
KP [auth 2],
KQ [auth 3],
LB [auth 1],
LC [auth 1],
LD [auth 1],
LE [auth 1],
LF [auth 1],
LG [auth 1],
LH [auth 1],
LI [auth 1],
LJ [auth 1],
LK [auth 1],
LL [auth 1],
LM [auth 2],
LN [auth 2],
LO [auth 2],
LP [auth 2],
LQ [auth 3],
MB [auth 1],
MC [auth 1],
MD [auth 1],
ME [auth 1],
MF [auth 1],
MG [auth 1],
MH [auth 1],
MI [auth 1],
MJ [auth 1],
MK [auth 1],
ML [auth 1],
MM [auth 2],
MN [auth 2],
MO [auth 2],
MP [auth 2],
MQ [auth 3],
NB [auth 1],
NC [auth 1],
ND [auth 1],
NE [auth 1],
NF [auth 1],
NG [auth 1],
NH [auth 1],
NI [auth 1],
NJ [auth 1],
NK [auth 1],
NL [auth 1],
NM [auth 2],
NN [auth 2],
NO [auth 2],
NP [auth 2],
NQ [auth 3],
OB [auth 1],
OC [auth 1],
OD [auth 1],
OE [auth 1],
OF [auth 1],
OG [auth 1],
OH [auth 1],
OI [auth 1],
OJ [auth 1],
OK [auth 1],
OL [auth 1],
OM [auth 2],
ON [auth 2],
OO [auth 2],
OP [auth 2],
OQ [auth 3],
PB [auth 1],
PC [auth 1],
PD [auth 1],
PE [auth 1],
PF [auth 1],
PG [auth 1],
PH [auth 1],
PI [auth 1],
PJ [auth 1],
PK [auth 1],
PL [auth 1],
PM [auth 2],
PN [auth 2],
PO [auth 2],
PP [auth 2],
PQ [auth 3],
QB [auth 1],
QC [auth 1],
QD [auth 1],
QE [auth 1],
QF [auth 1],
QG [auth 1],
QH [auth 1],
QI [auth 1],
QJ [auth 1],
QK [auth 1],
QL [auth 1],
QM [auth 2],
QN [auth 2],
QO [auth 2],
QP [auth 2],
QQ [auth 4],
RB [auth 1],
RC [auth 1],
RD [auth 1],
RE [auth 1],
RF [auth 1],
RG [auth 1],
RH [auth 1],
RI [auth 1],
RJ [auth 1],
RK [auth 1],
RL [auth 1],
RM [auth 2],
RN [auth 2],
RO [auth 2],
RP [auth 2],
RQ [auth C],
SB [auth 1],
SC [auth 1],
SD [auth 1],
SE [auth 1],
SF [auth 1],
SG [auth 1],
SH [auth 1],
SI [auth 1],
SJ [auth 1],
SK [auth 1],
SL [auth 1],
SM [auth 2],
SN [auth 2],
SO [auth 2],
SP [auth 2],
SQ [auth D],
TB [auth 1],
TC [auth 1],
TD [auth 1],
TE [auth 1],
TF [auth 1],
TG [auth 1],
TH [auth 1],
TI [auth 1],
TJ [auth 1],
TK [auth 1],
TL [auth 2],
TM [auth 2],
TN [auth 2],
TO [auth 2],
TP [auth 2],
TQ [auth D],
UB [auth 1],
UC [auth 1],
UD [auth 1],
UE [auth 1],
UF [auth 1],
UG [auth 1],
UH [auth 1],
UI [auth 1],
UJ [auth 1],
UK [auth 1],
UL [auth 2],
UM [auth 2],
UN [auth 2],
UO [auth 2],
UP [auth 2],
UQ [auth P],
VB [auth 1],
VC [auth 1],
VD [auth 1],
VE [auth 1],
VF [auth 1],
VG [auth 1],
VH [auth 1],
VI [auth 1],
VJ [auth 1],
VK [auth 1],
VL [auth 2],
VM [auth 2],
VN [auth 2],
VO [auth 2],
VP [auth 2],
VQ [auth T],
WB [auth 1],
WC [auth 1],
WD [auth 1],
WE [auth 1],
WF [auth 1],
WG [auth 1],
WH [auth 1],
WI [auth 1],
WJ [auth 1],
WK [auth 1],
WL [auth 2],
WM [auth 2],
WN [auth 2],
WO [auth 2],
WP [auth 2],
XB [auth 1],
XC [auth 1],
XD [auth 1],
XE [auth 1],
XF [auth 1],
XG [auth 1],
XH [auth 1],
XI [auth 1],
XJ [auth 1],
XK [auth 1],
XL [auth 2],
XM [auth 2],
XN [auth 2],
XO [auth 2],
XP [auth 2],
XQ [auth a],
YB [auth 1],
YC [auth 1],
YD [auth 1],
YE [auth 1],
YF [auth 1],
YG [auth 1],
YH [auth 1],
YI [auth 1],
YJ [auth 1],
YK [auth 1],
YL [auth 2],
YM [auth 2],
YN [auth 2],
YO [auth 2],
YP [auth 2],
YQ [auth a],
ZB [auth 1],
ZC [auth 1],
ZD [auth 1],
ZE [auth 1],
ZF [auth 1],
ZG [auth 1],
ZH [auth 1],
ZI [auth 1],
ZJ [auth 1],
ZK [auth 1],
ZL [auth 2],
ZM [auth 2],
ZN [auth 2],
ZO [auth 2],
ZP [auth 2]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
0TD
Query on 0TD
RA [auth p]L-PEPTIDE LINKINGC5 H9 N O4 SASP
FME
Query on FME
CB [auth B]L-PEPTIDE LINKINGC6 H11 N O3 SMET
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Economy and Competitiveness (MINECO)SpainCTQ2015-73560-JIN
European Research Council (ERC)European Union787926
Ministry of Economy and Competitiveness (MINECO)SpainPGC2018-098996-B-I00

Revision History  (Full details and data files)

  • Version 1.0: 2022-01-19
    Type: Initial release
  • Version 1.1: 2022-02-23
    Changes: Database references
  • Version 1.2: 2022-03-02
    Changes: Database references