7O6P

Structure of the borneol dehydrogenase 2 of Salvia officinalis


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.04 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

CryoEM analysis of small plant biocatalysts at sub-2 angstrom resolution.

Dimos, N.Helmer, C.P.O.Chanique, A.M.Wahl, M.C.Kourist, R.Hilal, T.Loll, B.

(2022) Acta Crystallogr D Struct Biol 78: 113-123

  • DOI: https://doi.org/10.1107/S205979832101216X
  • Primary Citation of Related Structures:  
    7O6P, 7O6Q

  • PubMed Abstract: 

    Enzyme catalysis has emerged as a key technology for developing efficient, sustainable processes in the chemical, biotechnological and pharmaceutical industries. Plants provide large and diverse pools of biosynthetic enzymes that facilitate complex reactions, such as the formation of intricate terpene carbon skeletons, with exquisite specificity. High-resolution structural analysis of these enzymes is crucial in order to understand their mechanisms and modulate their properties by targeted engineering. Although cryo-electron microscopy (cryoEM) has revolutionized structural biology, its applicability to high-resolution structural analysis of comparatively small enzymes has so far been largely unexplored. Here, it is shown that cryoEM can reveal the structures of plant borneol dehydrogenases of ∼120 kDa at or below 2 Å resolution, paving the way for the rapid development of new biocatalysts that can provide access to bioactive terpenes and terpenoids.


  • Organizational Affiliation

    Institute of Chemistry and Biochemistry, Department of Biology, Chemistry, Pharmacy, Laboratory of Structural Biochemistry, Free University of Berlin, Takustrasse 6, 14195 Berlin, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
borneol dehydrogenase
A, B, C, D
303Salvia officinalisMutation(s): 0 
EC: 1.1.1.198
UniProt
Find proteins for A0A8F5XX49 (Salvia officinalis)
Explore A0A8F5XX49 
Go to UniProtKB:  A0A8F5XX49
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A8F5XX49
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.04 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC2.19
RECONSTRUCTIONARP/wARP

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Federal Ministry for Education and ResearchGermany031B050B
Austrian Science FundAustriaP31001-B29
German Research Foundation (DFG)GermanyINST 335/588-1
German Research Foundation (DFG)GermanyINST 335/589-1
German Research Foundation (DFG)GermanyINST 335/590-1
German Research Foundation (DFG)GermanyHA 2549/15-2

Revision History  (Full details and data files)

  • Version 1.0: 2021-12-01
    Type: Initial release
  • Version 1.1: 2022-01-19
    Changes: Database references
  • Version 1.2: 2024-07-10
    Changes: Data collection