7NDX

Crystal structure of the human HSP40 DNAJB1-CTDs in complex with a peptide of NudC


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.54 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.233 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

NudC guides client transfer between the Hsp40/70 and Hsp90 chaperone systems.

Biebl, M.M.Delhommel, F.Faust, O.Zak, K.M.Agam, G.Guo, X.Muhlhofer, M.Dahiya, V.Hillebrand, D.Popowicz, G.M.Kampmann, M.Lamb, D.C.Rosenzweig, R.Sattler, M.Buchner, J.

(2022) Mol Cell 82: 555

  • DOI: https://doi.org/10.1016/j.molcel.2021.12.031
  • Primary Citation of Related Structures:  
    7NDX

  • PubMed Abstract: 

    In the eukaryotic cytosol, the Hsp70 and the Hsp90 chaperone machines work in tandem with the maturation of a diverse array of client proteins. The transfer of nonnative clients between these systems is essential to the chaperoning process, but how it is regulated is still not clear. We discovered that NudC is an essential transfer factor with an unprecedented mode of action: NudC interacts with Hsp40 in Hsp40-Hsp70-client complexes and displaces Hsp70. Then, the interaction of NudC with Hsp90 allows the direct transfer of Hsp40-bound clients to Hsp90 for further processing. Consistent with this mechanism, NudC increases client activation in vitro as well as in cells and is essential for cellular viability. Together, our results show the complexity of the cooperation between the major chaperone machineries in the eukaryotic cytosol.


  • Organizational Affiliation

    Department of Chemistry, Technische Universität München, Lichtenbergstrasse 4, 85747 Garching, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DnaJ homolog subfamily B member 1184Homo sapiensMutation(s): 0 
Gene Names: DNAJB1DNAJ1HDJ1HSPF1
UniProt & NIH Common Fund Data Resources
Find proteins for P25685 (Homo sapiens)
Explore P25685 
Go to UniProtKB:  P25685
PHAROS:  P25685
GTEx:  ENSG00000132002 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP25685
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Nuclear migration protein nudC42Homo sapiensMutation(s): 0 
Gene Names: NUDC
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y266 (Homo sapiens)
Explore Q9Y266 
Go to UniProtKB:  Q9Y266
GTEx:  ENSG00000090273 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Y266
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.54 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.233 
  • Space Group: I 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 41.3α = 90
b = 128.264β = 90
c = 135.213γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Molecular Biology Organization (EMBO)GermanyALTF 243-2018
German Research Foundation (DFG)GermanySFB 1035 - project A03
Helmholtz AssociationGermanyZT-I-0003

Revision History  (Full details and data files)

  • Version 1.0: 2022-01-19
    Type: Initial release
  • Version 1.1: 2022-02-09
    Changes: Database references
  • Version 1.2: 2022-02-16
    Changes: Database references
  • Version 1.3: 2024-01-31
    Changes: Data collection, Derived calculations, Refinement description