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 7N7P | pdb_00007n7p

Cryo-EM structure of human TMEM120A


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.24 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 7N7P

This is version 1.1 of the entry. See complete history. 

Literature

TMEM120A is a coenzyme A-binding membrane protein with structural similarities to ELOVL fatty acid elongase.

Xue, J., Han, Y., Baniasadi, H., Zeng, W., Pei, J., Grishin, N.V., Wang, J., Tu, B.P., Jiang, Y.

(2021) Elife 10

  • DOI: https://doi.org/10.7554/eLife.71220
  • Primary Citation Related Structures: 
    7N7P

  • PubMed Abstract: 

    TMEM120A, also named as TACAN, is a novel membrane protein highly conserved in vertebrates and was recently proposed to be a mechanosensitive channel involved in sensing mechanical pain. Here we present the single-particle cryogenic electron microscopy (cryo-EM) structure of human TMEM120A, which forms a tightly packed dimer with extensive interactions mediated by the N-terminal coiled coil domain (CCD), the C-terminal transmembrane domain (TMD), and the re-entrant loop between the two domains. The TMD of each TMEM120A subunit contains six transmembrane helices (TMs) and has no clear structural feature of a channel protein. Instead, the six TMs form an α-barrel with a deep pocket where a coenzyme A (CoA) molecule is bound. Intriguingly, some structural features of TMEM120A resemble those of elongase for very long-chain fatty acids (ELOVL) despite the low sequence homology between them, pointing to the possibility that TMEM120A may function as an enzyme for fatty acid metabolism, rather than a mechanosensitive channel.


  • Organizational Affiliation: 
    • Department of Physiology, University of Texas Southwestern Medical Center, Dallas, United States.

Macromolecule Content 

  • Total Structure Weight: 85.56 kDa 
  • Atom Count: 5,400 
  • Modeled Residue Count: 626 
  • Deposited Residue Count: 712 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Ion channel TACAN
A, B
356Homo sapiensMutation(s): 0 
Gene Names: TMEM120A, TACAN, TMPIT
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BXJ8 (Homo sapiens)
Explore Q9BXJ8 
Go to UniProtKB:  Q9BXJ8
PHAROS:  Q9BXJ8
GTEx:  ENSG00000189077 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BXJ8
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.24 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM079179

Revision History  (Full details and data files)

  • Version 1.0: 2021-09-01
    Type: Initial release
  • Version 1.1: 2024-06-05
    Changes: Data collection