7N61

structure of C2 projections and MIPs


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cryo-EM structure of an active central apparatus.

Han, L.Rao, Q.Yang, R.Wang, Y.Chai, P.Xiong, Y.Zhang, K.

(2022) Nat Struct Mol Biol 29: 472-482

  • DOI: https://doi.org/10.1038/s41594-022-00769-9
  • Primary Citation of Related Structures:  
    7N61, 7N6G

  • PubMed Abstract: 

    Accurately regulated ciliary beating in time and space is critical for diverse cellular activities, which impact the survival and development of nearly all eukaryotic species. An essential beating regulator is the conserved central apparatus (CA) of motile cilia, composed of a pair of microtubules (C1 and C2) associated with hundreds of protein subunits per repeating unit. It is largely unclear how the CA plays its regulatory roles in ciliary motility. Here, we present high-resolution structures of Chlamydomonas reinhardtii CA by cryo-electron microscopy (cryo-EM) and its dynamic conformational behavior at multiple scales. The structures show how functionally related projection proteins of CA are clustered onto a spring-shaped scaffold of armadillo-repeat proteins, facilitated by elongated rachis-like proteins. The two halves of the CA are brought together by elastic chain-like bridge proteins to achieve coordinated activities. We captured an array of kinesin-like protein (KLP1) in two different stepping states, which are actively correlated with beating wave propagation of cilia. These findings establish a structural framework for understanding the role of the CA in cilia.


  • Organizational Affiliation

    Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar WD repeat-containing protein Pf20A [auth 0A],
B [auth 0B],
C [auth 0C],
D [auth 0D]
606Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for P93107 (Chlamydomonas reinhardtii)
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UniProt GroupP93107
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
FAP178E [auth 0E],
F [auth 0F],
G [auth 0G],
H [auth 0H]
222Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
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UniProt GroupA0A2K3D8Z6
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
FAP147I [auth 0I],
J [auth 0J]
976Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
FAP239K [auth 0K],
L [auth 0L]
528Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
FAP225M [auth 0M],
N [auth 0N]
758Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
FAP213O [auth 0O],
P [auth 0P]
201Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
FAP196Q [auth 0Q],
R [auth 0S]
618Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3CQT7 (Chlamydomonas reinhardtii)
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Unassigned protein-1S [auth 0T]169Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Unassigned protein-2T [auth 0U]170Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Unassigned protein-3U [auth 0V]160Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Unassigned protein-4V [auth 0W]39Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Kinesin-like proteinW [auth 0X],
X [auth 0Y],
Y [auth 0Z],
Z [auth 1A]
776Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
FAP65AA [auth 1B],
BA [auth 1C]
2,257Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
FAP70CA [auth 1D],
DA [auth 1E],
EA [auth 1F],
FA [auth 1G]
1,074Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Unassigned protein-5GA [auth 1H]88Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Unassigned protein-6HA [auth 1M],
IE [auth 1L]
174Chlamydomonas reinhardtiiMutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin beta443Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin alpha451Chlamydomonas reinhardtiiMutation(s): 0 
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Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GTP
Query on GTP

Download Ideal Coordinates CCD File 
AF [auth 2f]
AG [auth 5h]
AH [auth 9b]
AI [auth Cd]
CF [auth 2h]
AF [auth 2f],
AG [auth 5h],
AH [auth 9b],
AI [auth Cd],
CF [auth 2h],
CG [auth 6b],
CH [auth 9d],
CI [auth Cf],
EF [auth 3b],
EG [auth 6d],
EH [auth 9f],
EI [auth Ch],
GF [auth 3d],
GG [auth 6f],
GH [auth 9h],
GI [auth Db],
IF [auth 3f],
IG [auth 6h],
IH [auth Ab],
II [auth Dd],
KF [auth 3h],
KG [auth 7b],
KH [auth Ad],
KI [auth Df],
MF [auth 4b],
MG [auth 7d],
MH [auth Af],
MI [auth Dh],
OE [auth 1b],
OF [auth 4d],
OG [auth 7f],
OH [auth Ah],
QE [auth 1d],
QF [auth 4f],
QG [auth 7h],
QH [auth Bb],
SE [auth 1f],
SF [auth 4h],
SG [auth 8b],
SH [auth Bd],
UE [auth 1h],
UF [auth 5b],
UG [auth 8d],
UH [auth Bf],
WE [auth 2b],
WF [auth 5d],
WG [auth 8f],
WH [auth Bh],
YE [auth 2d],
YF [auth 5f],
YG [auth 8h],
YH [auth Cb]
GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
GDP
Query on GDP

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BF [auth 2g]
BG [auth 6a]
BH [auth 9c]
BI [auth Ce]
DF [auth 3a]
BF [auth 2g],
BG [auth 6a],
BH [auth 9c],
BI [auth Ce],
DF [auth 3a],
DG [auth 6c],
DH [auth 9e],
DI [auth Cg],
FF [auth 3c],
FG [auth 6e],
FH [auth 9g],
FI [auth Da],
HF [auth 3e],
HG [auth 6g],
HH [auth Aa],
HI [auth Dc],
JF [auth 3g],
JG [auth 7a],
JH [auth Ac],
JI [auth De],
LF [auth 4a],
LG [auth 7c],
LH [auth Ae],
LI [auth Dg],
NE [auth 1a],
NF [auth 4c],
NG [auth 7e],
NH [auth Ag],
PE [auth 1c],
PF [auth 4e],
PG [auth 7g],
PH [auth Ba],
RE [auth 1e],
RF [auth 4g],
RG [auth 8a],
RH [auth Bc],
TE [auth 1g],
TF [auth 5a],
TG [auth 8c],
TH [auth Be],
VE [auth 2a],
VF [auth 5c],
VG [auth 8e],
VH [auth Bg],
XE [auth 2c],
XF [auth 5e],
XG [auth 8g],
XH [auth Ca],
ZE [auth 2e],
ZF [auth 5g],
ZG [auth 9a],
ZH [auth Cc]
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
ADP (Subject of Investigation/LOI)
Query on ADP

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JE [auth 0X],
KE [auth 0Y],
LE [auth 0Z],
ME [auth 1A]
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other privateUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2022-05-18
    Type: Initial release
  • Version 1.1: 2022-06-01
    Changes: Database references