7MBZ

Outward facing conformation of the MetNI methionine ABC transporter in complex with lipo-MetQ


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Characterization of the ABC methionine transporter from Neisseria meningitidis reveals that lipidated MetQ is required for interaction.

Sharaf, N.G.Shahgholi, M.Kim, E.Lai, J.Y.VanderVelde, D.G.Lee, A.T.Rees, D.C.

(2021) Elife 10

  • DOI: https://doi.org/10.7554/eLife.69742
  • Primary Citation of Related Structures:  
    7MBZ, 7MC0

  • PubMed Abstract: 

    NmMetQ is a substrate-binding protein (SBP) from Neisseria meningitidis that has been identified as a surface-exposed candidate antigen for meningococcal vaccines. However, this location for NmMetQ challenges the prevailing view that SBPs in Gram-negative bacteria are localized to the periplasmic space to promote interaction with their cognate ABC transporter embedded in the bacterial inner membrane. To elucidate the roles of NmMetQ, we characterized NmMetQ with and without its cognate ABC transporter (NmMetNI). Here, we show that NmMetQ is a lipoprotein (lipo-NmMetQ) that binds multiple methionine analogs and stimulates the ATPase activity of NmMetNI. Using single-particle electron cryo-microscopy, we determined the structures of NmMetNI in the presence and absence of lipo-NmMetQ. Based on our data, we propose that NmMetQ tethers to membranes via a lipid anchor and has dual function and localization, playing a role in NmMetNI-mediated transport at the inner membrane and moonlighting on the bacterial surface.


  • Organizational Affiliation

    Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, United States.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ABC transporter, permease proteinA,
C [auth B]
228Neisseria meningitidis MC58Mutation(s): 0 
Gene Names: NMB1947
Membrane Entity: Yes 
UniProt
Find proteins for Q9JXP3 (Neisseria meningitidis serogroup B (strain MC58))
Explore Q9JXP3 
Go to UniProtKB:  Q9JXP3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9JXP3
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
LipoproteinB [auth E]300Neisseria meningitidis MC58Mutation(s): 0 
Gene Names: NMB1946
Membrane Entity: Yes 
UniProt
Find proteins for Q7DD63 (Neisseria meningitidis serogroup B (strain MC58))
Explore Q7DD63 
Go to UniProtKB:  Q7DD63
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7DD63
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
ABC transporter, ATP-binding proteinD [auth C],
E [auth D]
268Neisseria meningitidis MC58Mutation(s): 0 
Gene Names: NMB1948
Membrane Entity: Yes 
UniProt
Find proteins for Q9JXP2 (Neisseria meningitidis serogroup B (strain MC58))
Explore Q9JXP2 
Go to UniProtKB:  Q9JXP2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9JXP2
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTISOLDE
MODEL REFINEMENTCoot

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Howard Hughes Medical Institute (HHMI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2021-09-01
    Type: Initial release
  • Version 1.1: 2021-09-08
    Changes: Data processing