7M3X

Crystal Structure of the Apo Form of Human RBBP7

• PDB DOI: https://doi.org/10.2210/pdb7M3X/pdb

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2021-03-19 Released: 2021-05-05 
• Deposition Author(s): Righetto, G.L., Dong, A., Li, Y., Hutchinson, A., Seitova, A., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.46 Å
• R-Value Free: 0.193 
• R-Value Work: 0.170 
• R-Value Observed: 0.171 

Literature

Crystal Structure of the Apo Form of Human RBBP7

Righetto, G.L., Dong, A., Li, Y., Hutchinson, A., Seitova, A., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 46.05 kDa 
• Atom Count: 3,510 
• Modelled Residue Count: 378 
• Deposited Residue Count: 407 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Histone-binding protein RBBP7	A	407	Homo sapiens	Mutation(s): 0  Gene Names: RBBP7, RBAP46
UniProt & NIH Common Fund Data Resources
Find proteins for Q16576 (Homo sapiens) Explore Q16576  Go to UniProtKB:  Q16576
PHAROS:  Q16576 GTEx:  ENSG00000102054

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
UNX	B [auth A], C [auth A]	UNKNOWN ATOM OR ION X

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.46 Å
• R-Value Free: 0.193 
• R-Value Work: 0.170 
• R-Value Observed: 0.171 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.726	α = 90
b = 88.775	β = 90
c = 97.165	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data scaling
PDB_EXTRACT	data extraction
HKL-3000	data reduction
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2021-05-05 
Deposition Author(s): Righetto, G.L., Dong, A., Li, Y., Hutchinson, A., Seitova, A., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2021-05-05
  Type: Initial release
  
• Version 1.1: 2023-10-18
  Changes: Data collection, Database references, Refinement description