Macromolecule Content

Total Structure Weight: 196.59 kDa
Atom Count: 13,860
Modelled Residue Count: 1,770
Deposited Residue Count: 1,812
Unique protein chains: 1

7LOY

Dihydrodipicolinate synthase with pyruvate from Candidatus Liberibacter solanacearum

PDB DOI: 10.2210/pdb7LOY/pdb

Classification: LYASE
Organism(s): Candidatus Liberibacter solanacearum
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2021-02-11 Released: 2021-03-03
Deposition Author(s): Gilkes, J.M., Frampton, R.A., Board, A., Sheen, C.R., Smith, G.R., Dobson, R.C.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.237
R-Value Work: 0.204
R-Value Observed: 0.205

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Dihydrodipicolinate synthase with pyruvate from the plant pathogen, Candidatus Liberibacter solanacearum

Gilkes, J.M., Frampton, R.A., Board, A., Sheen, C.R., Smith, G.R., Dobson, R.C.J.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
4-hydroxy-tetrahydrodipicolinate synthase	A, B, C, D, E, F A, B, C, D, E, F	302	Candidatus Liberibacter solanacearum	Mutation(s): 0 Gene Names: dapA, DJ66_0589 EC: 4.3.3.7
UniProt
Find proteins for A0A0F4VK59 (Candidatus Liberibacter solanacearum) Explore A0A0F4VK59 Go to UniProtKB: A0A0F4VK59
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0F4VK59
Protein Feature View Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
KPI Query on KPI	A, B, C, D, E, F A, B, C, D, E, F	L-PEPTIDE LINKING	C₉ H₁₆ N₂ O₄		LYS

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.237
R-Value Work: 0.204
R-Value Observed: 0.205
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 101.777	α = 90
b = 133.581	β = 100.55
c = 155.988	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
pointless	data scaling
PHASER	phasing
XDS	data reduction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2021-03-03

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-03-03
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.