7LNS

NMR solution structure of PsDef2 defensin from P. sylvestris


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structure, dynamics, and function of PsDef2 defensin from Pinus sylvestris.

Bukhteeva, I.Hrunyk, N.I.Yusypovych, Y.M.Shalovylo, Y.I.Kovaleva, V.Nesmelova, I.V.

(2022) Structure 30: 753

  • DOI: https://doi.org/10.1016/j.str.2022.03.001
  • Primary Citation of Related Structures:  
    7LNS

  • PubMed Abstract: 

    Plant defensins demonstrate high structural stability at extreme temperatures and pH values and, in general, are non-toxic to mammalian cells. These properties make them attractive candidates for use in biotechnology and biomedicine. Knowing the structure-function relationship is desirable to guide the design of plant defensin-based applications. Thus far, the broad range of biological activities was described only for one defensin from gymnosperms, the defensin PsDef1 from Scots pine. Here, we report that closely related defensin from the same taxonomy group, PsDef2, differing from PsDef1 by six amino acids, also possesses antimicrobial, antibacterial, and insect α-amylase inhibitory activities. We also report the solution structure and dynamics properties of PsDef2 assessed using a combination of experimental nuclear magnetic resonance (NMR) techniques. Lastly, we perform a comparative analysis of PsDef2 and PsDef1 gaining a molecular-level insight into their structure-dynamics-function relationship.


  • Organizational Affiliation

    Department of Physics and Optical Science, University of North Carolina, Charlotte, NC 28223, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Defensin-250Pinus sylvestrisMutation(s): 0 
Gene Names: Def2
Membrane Entity: Yes 
UniProt
Find proteins for A4L7R8 (Pinus sylvestris)
Explore A4L7R8 
Go to UniProtKB:  A4L7R8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA4L7R8
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
CRDF GlobalUnited StatesFSA-19-65490-0
CRDF GlobalUkraineFSA-19-65491-0

Revision History  (Full details and data files)

  • Version 1.0: 2022-03-30
    Type: Initial release
  • Version 1.1: 2022-04-06
    Changes: Database references
  • Version 1.2: 2022-05-18
    Changes: Database references
  • Version 1.3: 2023-06-14
    Changes: Other