7LJ9

Structure of human ATP citrate lyase in complex with acetyl-CoA and oxaloacetate

• PDB DOI: https://doi.org/10.2210/pdb7LJ9/pdb
• EM Map EMD-23389: EMDB EMDataResource

• Classification: LYASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2021-01-28 Released: 2021-03-31 
• Deposition Author(s): Wei, X., Marmorstein, R.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Reply to: Acetyl-CoA is produced by the citrate synthase homology module of ATP-citrate lyase.

Wei, X., Marmorstein, R.

(2021) Nat Struct Mol Biol 28: 639-641

• PubMed: 34294921 
• DOI: https://doi.org/10.1038/s41594-021-00625-2
• Primary Citation of Related Structures:  
  7LIW, 7LJ9, 7LLA

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Organizational Affiliation: 

Department of Biochemistry & Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 4-mer - A3B1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 485.4 kDa 
• Atom Count: 14,516 
• Modelled Residue Count: 1,865 
• Deposited Residue Count: 4,404 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP-citrate synthase	A, B, C, D	1,101	Homo sapiens	Mutation(s): 0  Gene Names: ACLY EC: 2.3.3.8
UniProt & NIH Common Fund Data Resources
Find proteins for P53396 (Homo sapiens) Explore P53396  Go to UniProtKB:  P53396
PHAROS:  P53396 GTEx:  ENSG00000131473

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ACO (Subject of Investigation/LOI)	H [auth D]	ACETYL COENZYME *A C23 H38 N7 O17 P3 S ZSLZBFCDCINBPY-ZSJPKINUSA-N
OAA (Subject of Investigation/LOI)	E [auth A], F [auth B], G [auth C], I [auth D], J [auth D]	OXALOACETATE ION C4 H3 O5 KHPXUQMNIQBQEV-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2021-03-31 
Deposition Author(s): Wei, X., Marmorstein, R.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	P01 AG031862

Revision History  

• Version 1.0: 2021-03-31
  Type: Initial release
  
• Version 1.1: 2021-07-28
  Changes: Database references
• Version 1.2: 2021-08-25
  Changes: Database references