7LF6

Structure of lysosomal membrane protein


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

pH regulates potassium conductance and drives a constitutive proton current in human TMEM175.

Zheng, W.Shen, C.Wang, L.Rawson, S.Xie, W.J.Nist-Lund, C.Wu, J.Shen, Z.Xia, S.Holt, J.R.Wu, H.Fu, T.M.

(2022) Sci Adv 8: eabm1568-eabm1568

  • DOI: https://doi.org/10.1126/sciadv.abm1568
  • Primary Citation of Related Structures:  
    7LF6

  • PubMed Abstract: 

    Human TMEM175, a noncanonical potassium (K + ) channel in endolysosomes, contributes to their pH stability and is implicated in the pathogenesis of Parkinson's disease (PD). Structurally, the TMEM175 family exhibits an architecture distinct from canonical potassium channels, as it lacks the typical TVGYG selectivity filter. Here, we show that human TMEM175 not only exhibits pH-dependent structural changes that reduce K + permeation at acidic pH but also displays proton permeation. TMEM175 constitutively conducts K + at pH 7.4 but displays reduced K + permeation at lower pH. In contrast, proton current through TMEM175 increases with decreasing pH because of the increased proton gradient. Molecular dynamics simulation, structure-based mutagenesis, and electrophysiological analysis suggest that K + ions and protons share the same permeation pathway. The M393T variant of human TMEM175 associated with PD shows reduced function in both K + and proton permeation. Together, our structural and electrophysiological analysis reveals a mechanism of TMEM175 regulation by pH.


  • Organizational Affiliation

    Departments of Otolaryngology and Neurology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Endosomal/lysosomal potassium channel TMEM175
A, B
504Homo sapiensMutation(s): 0 
Gene Names: TMEM175
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BSA9 (Homo sapiens)
Explore Q9BSA9 
Go to UniProtKB:  Q9BSA9
PHAROS:  Q9BSA9
GTEx:  ENSG00000127419 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BSA9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2022-01-26
    Type: Initial release
  • Version 1.1: 2023-08-09
    Changes: Database references