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 7L0S | pdb_00007l0s

Structure of NTS-NTSR1-Gi complex in lipid nanodisc, noncanonical state, with AHD


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 7L0S

This is version 1.3 of the entry. See complete history. 

Literature

Cryo-EM structure of an activated GPCR-G protein complex in lipid nanodiscs.

Zhang, M., Gui, M., Wang, Z.F., Gorgulla, C., Yu, J.J., Wu, H., Sun, Z.J., Klenk, C., Merklinger, L., Morstein, L., Hagn, F., Pluckthun, A., Brown, A., Nasr, M.L., Wagner, G.

(2021) Nat Struct Mol Biol 28: 258-267

  • DOI: https://doi.org/10.1038/s41594-020-00554-6
  • Primary Citation Related Structures: 
    7L0P, 7L0Q, 7L0R, 7L0S

  • PubMed Abstract: 

    G-protein-coupled receptors (GPCRs) are the largest superfamily of transmembrane proteins and the targets of over 30% of currently marketed pharmaceuticals. Although several structures have been solved for GPCR-G protein complexes, few are in a lipid membrane environment. Here, we report cryo-EM structures of complexes of neurotensin, neurotensin receptor 1 and Gα i1 β 1 γ 1 in two conformational states, resolved to resolutions of 4.1 and 4.2 Å. The structures, determined in a lipid bilayer without any stabilizing antibodies or nanobodies, reveal an extended network of protein-protein interactions at the GPCR-G protein interface as compared to structures obtained in detergent micelles. The findings show that the lipid membrane modulates the structure and dynamics of complex formation and provide a molecular explanation for the stronger interaction between GPCRs and G proteins in lipid bilayers. We propose an allosteric mechanism for GDP release, providing new insights into the activation of G proteins for downstream signaling.


  • Organizational Affiliation: 
    • Department of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA, USA.

Macromolecule Content 

  • Total Structure Weight: 128.56 kDa 
  • Atom Count: 7,906 
  • Modeled Residue Count: 1,001 
  • Deposited Residue Count: 1,144 
  • Unique protein chains: 5

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Neurotensin receptor type 1A [auth C]336Rattus norvegicusMutation(s): 10 
Gene Names: Ntsr1, Ntsr
Membrane Entity: Yes 
UniProt
Find proteins for P20789 (Rattus norvegicus)
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Go to UniProtKB:  P20789
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UniProt GroupP20789
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
NeurotensinB [auth D]10Rattus norvegicusMutation(s): 0 
Gene Names: Nts
Membrane Entity: Yes 
UniProt
Find proteins for P20068 (Rattus norvegicus)
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(i) subunit alpha-1C [auth A]354Homo sapiensMutation(s): 0 
Gene Names: GNAI1
EC: 3.6.5
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P63096 (Homo sapiens)
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PHAROS:  P63096
GTEx:  ENSG00000127955 
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1D [auth B]361Homo sapiensMutation(s): 0 
Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens)
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PHAROS:  P62873
GTEx:  ENSG00000078369 
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(T) subunit gamma-T1E [auth G]83Homo sapiensMutation(s): 0 
Gene Names: GNGT1
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P63211 (Homo sapiens)
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Go to UniProtKB:  P63211
PHAROS:  P63211
GTEx:  ENSG00000127928 
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UniProt GroupP63211
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.18.2
RECONSTRUCTIONRELION3.1

Structure Validation

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Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2021-01-06
    Type: Initial release
  • Version 1.1: 2021-03-10
    Changes: Database references
  • Version 1.2: 2021-03-24
    Changes: Database references
  • Version 1.3: 2024-10-23
    Changes: Data collection, Database references, Structure summary