7KMX

The capsid of Myoviridae Phage XM1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of Vibrio phage XM1, a simple contractile DNA injection machine

Wang, Z.Fokine, A.Guo, X.Jiang, W.Rossmann, M.G.Kuhn, R.J.Luo, Z.H.Klose, T.

(2021) Biorxiv 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Minor capsid protein160Vibrio phage XM1Mutation(s): 0 
UniProt
Find proteins for A0A7D7FKF5 (Vibrio phage XM1)
Explore A0A7D7FKF5 
Go to UniProtKB:  A0A7D7FKF5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7D7FKF5
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Major capsid protein324Vibrio phage XM1Mutation(s): 0 
UniProt
Find proteins for A0A7D7J3A3 (Vibrio phage XM1)
Explore A0A7D7J3A3 
Go to UniProtKB:  A0A7D7J3A3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7D7J3A3
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONjspr

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, United States)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2021-11-10
    Type: Initial release
  • Version 1.1: 2022-05-25
    Changes: Database references, Derived calculations