7KHX

Mouse GITR-GITRL complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.21 Å
  • R-Value Free: 0.278 
  • R-Value Work: 0.244 
  • R-Value Observed: 0.245 

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Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Structures of mouse and human GITR-GITRL complexes reveal unique TNF superfamily interactions.

Wang, F.Chau, B.West, S.M.Kimberlin, C.R.Cao, F.Schwarz, F.Aguilar, B.Han, M.Morishige, W.Bee, C.Dollinger, G.Rajpal, A.Strop, P.

(2021) Nat Commun 12: 1378-1378

  • DOI: https://doi.org/10.1038/s41467-021-21563-z
  • Primary Citation of Related Structures:  
    7KHD, 7KHX

  • PubMed Abstract: 

    Glucocorticoid-induced tumor necrosis factor receptor-related protein (GITR) and GITR ligand (GITRL) are members of the tumor necrosis superfamily that play a role in immune cell signaling, activation, and survival. GITR is a therapeutic target for directly activating effector CD4 and CD8 T cells, or depleting GITR-expressing regulatory T cells (Tregs), thereby promoting anti-tumor immune responses. GITR activation through its native ligand is important for understanding immune signaling, but GITR structure has not been reported. Here we present structures of human and mouse GITR receptors bound to their cognate ligands. Both species share a receptor-ligand interface and receptor-receptor interface; the unique C-terminal receptor-receptor enables higher order structures on the membrane. Human GITR-GITRL has potential to form a hexameric network of membrane complexes, while murine GITR-GITRL complex forms a linear chain due to dimeric interactions. Mutations at the receptor-receptor interface in human GITR reduce cell signaling with in vitro ligand binding assays and minimize higher order membrane structures when bound by fluorescently labeled ligand in cell imaging experiments.


  • Organizational Affiliation

    Discovery Biotherapeutics, Bristol Myers Squibb, Redwood City, CA, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tumor necrosis factor ligand superfamily member 18A [auth B],
C [auth A]
132Mus musculusMutation(s): 0 
Gene Names: Tnfsf18Gitrl
UniProt & NIH Common Fund Data Resources
Find proteins for Q7TS55 (Mus musculus)
Explore Q7TS55 
Go to UniProtKB:  Q7TS55
IMPC:  MGI:2673064
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7TS55
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Tumor necrosis factor receptor superfamily member 18B [auth D],
D [auth C]
134Mus musculusMutation(s): 0 
Gene Names: Tnfrsf18Gitr
UniProt & NIH Common Fund Data Resources
Find proteins for O35714 (Mus musculus)
Explore O35714 
Go to UniProtKB:  O35714
IMPC:  MGI:894675
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO35714
Sequence Annotations
Expand
  • Reference Sequence
Oligosaccharides

Help

Entity ID: 3
MoleculeChains Length2D Diagram Glycosylation3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
E
2N-Glycosylation
Glycosylation Resources
GlyTouCan:  G42666HT
GlyCosmos:  G42666HT
GlyGen:  G42666HT
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.21 Å
  • R-Value Free: 0.278 
  • R-Value Work: 0.244 
  • R-Value Observed: 0.245 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 70.54α = 90
b = 64.82β = 91.228
c = 81.23γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-03-03
    Type: Initial release
  • Version 1.1: 2021-03-17
    Changes: Database references
  • Version 1.2: 2023-10-18
    Changes: Data collection, Database references, Refinement description