7KAE | pdb_00007kae

Rop protein variant with a buried tryptophan

PDB DOI: https://doi.org/10.2210/pdb7KAE/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Escherichia coli
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2020-09-30 Released: 2021-10-13
Deposition Author(s): Gallagher, D.T., Hoopes, J.T., Karageorgos, I.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free:
0.224 (Depositor), 0.221 (DCC)
R-Value Work:
0.194 (Depositor), 0.194 (DCC)
R-Value Observed:
0.196 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Structure of a Rop protein variant with a buried tryptophan

Hoopes, J.T., Karageorgos, I., Gallagher, D.T.

To be published.

Macromolecule Content

Total Structure Weight: 15.05 kDa
Atom Count: 993
Modeled Residue Count: 113
Deposited Residue Count: 130
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Regulatory protein rop	A, B	65	Escherichia coli	Mutation(s): 6 Gene Names: rop
UniProt
Find proteins for P03051 (Escherichia coli) Explore P03051 Go to UniProtKB: P03051
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P03051
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.224 (Depositor), 0.221 (DCC)
R-Value Work: 0.194 (Depositor), 0.194 (DCC)
R-Value Observed: 0.196 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 36.881	α = 90
b = 40.016	β = 90
c = 72.271	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-3000	data reduction
HKL-3000	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2021-10-13

Deposition Author(s):

Gallagher, D.T.

Karageorgos, I.

Revision History (Full details and data files)

Version 1.0: 2021-10-13
Type: Initial release
Version 1.1: 2023-10-18
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.