Macromolecule Content

Total Structure Weight: 247.10 kDa
Atom Count: 16038
Residue Count: 2070
Unique protein chains: 1

7K0R

Nucleotide bound SARS-CoV-2 Nsp15

DOI: 10.2210/pdb7K0R/pdb
EMDataResource: EMD-22610

Classification: VIRAL PROTEIN
Organism(s): Severe acute respiratory syndrome coronavirus 2
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-09-04 Released: 2020-12-09
Deposition Author(s): Pillon, M.C., Stanley, R.E.
Funding Organization(s): National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Literature

Cryo-EM Structures of the SARS-CoV-2 Endoribonuclease Nsp15 Reveal Insight into Nuclease Specificity and Dynamics

Pillon, M.C., Frazier, M.N., Dillard, L.B., Williams, J.G., Kocaman, S., Krahn, J.M., Perera, L., Hayne, C.K., Gordon, J., Stewart, Z.D., Sobhany, M., Deterding, L.J., Hsu, A.L., Dandey, V.P., Borgnia, M.J., Stanley, R.E.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ORF1ab polyprotein	A, B, C, D, E, F	362	Severe acute respiratory syndrome coronavirus 2	Mutation(s): 0 Gene Names: ORF1ab EC: 2.7.7.48 (UniProt), 3.4.19.12 (UniProt), 3.4.22.69 (UniProt), 3.6.4.12 (UniProt), 3.6.4.13 (UniProt)
Find proteins for A0A6H0QT63 (Severe acute respiratory syndrome coronavirus 2) Explore A0A6H0QT63 Go to UniProtKB: A0A6H0QT63
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
U5P Query on U5P Download Ideal Coordinates CCD File SDF format, chain G [A] SDF format, chain I [B] SDF format, chain K [C] SDF format, chain M [D] SDF format, chain O [E] SDF format, chain Q [F] MOL2 format, chain G [A] MOL2 format, chain I [B] MOL2 format, chain K [C] MOL2 format, chain M [D] MOL2 format, chain O [E] MOL2 format, chain Q [F]	A, B, C, D, E, F	URIDINE-5'-MONOPHOSPHATE C₉ H₁₃ N₂ O₉ P DJJCXFVJDGTHFX-XVFCMESISA-N		Ligand Interaction
PO4 Query on PO4 Download Ideal Coordinates CCD File SDF format, chain H [A] SDF format, chain J [B] SDF format, chain L [C] SDF format, chain N [D] SDF format, chain P [E] SDF format, chain R [F] MOL2 format, chain H [A] MOL2 format, chain J [B] MOL2 format, chain L [C] MOL2 format, chain N [D] MOL2 format, chain P [E] MOL2 format, chain R [F]	A, B, C, D, E, F	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Deposited Date: 2020-09-04
Released Date: 2020-12-09

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS)	United States	--

Revision History

Version 1.0: 2020-12-09
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.