7JZ7

Dihydrodipicolinate synthase mutant S48F

PDB DOI: https://doi.org/10.2210/pdb7JZ7/pdb

Classification: LYASE
Organism(s): Escherichia coli
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2020-09-01 Released: 2021-10-06
Deposition Author(s): Board, A.J., Dobson, R.C.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.74 Å
R-Value Free: 0.172
R-Value Work: 0.149
R-Value Observed: 0.150

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Mapping the unchartered waters of dihydrodipicolinate synthase: a novel mechanism of allosteric inhibition.

Board, A.J., Dobson, R.C.J.

To be published.

Macromolecule Content

Total Structure Weight: 63.35 kDa
Atom Count: 5,063
Modelled Residue Count: 584
Deposited Residue Count: 584
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
4-hydroxy-tetrahydrodipicolinate synthase	A, B	292	Escherichia coli	Mutation(s): 1 Gene Names: dapA, A6V01_06140, A8C65_04230, ACU57_04510, AM464_03890, AML07_10805, APZ14_05880, AUQ13_12840, AUS26_08890, AW106_01920... dapA, A6V01_06140, A8C65_04230, ACU57_04510, AM464_03890, AML07_10805, APZ14_05880, AUQ13_12840, AUS26_08890, AW106_01920, BANRA_01022, BANRA_04600, BMA87_04055, BUE81_00170, BvCms2454_00575, BvCmsKSP026_00126, BvCmsSINP011_00590, BW690_08395, BZL31_19835, C5N07_10510, C9306_12515, C9Z39_22035, C9Z89_01665, CG692_24655, CI693_08805, CIG45_08195, COD30_00655, D2185_06295, D3821_11825, D4638_04510, D4718_03620, D5H35_00590, D6004_00600, D9610_05430, D9D44_02140, D9I18_08280, D9J52_02245, D9S45_15015, DAH30_02905, DAH32_09095, DIV22_31750, DJ503_11770, DL326_03925, DL530_01595, DL800_18800, DLW60_01905, DMY83_09445, DNW42_05980, DQF71_00895, DS143_00895, DT034_06790, DTL43_01515, DVB38_05855, E2119_05140, E2134_09475, E2135_00560, E2855_03226, E2863_03133, E5P22_02280, E5S42_08940, EAI42_12285, EAI52_02575, EAM59_02025, EAN70_00660, EBM08_03910, EC3234A_44c00840, EC95NR1_01697, ECTO6_01408, ED307_17520, ED600_00625, EEP23_23010, EG599_00615, EH412_01980, EHJ36_02055, EI028_07440, EIZ93_19645, EKI52_22350, EL75_1173, EL79_1184, EL80_1189, EPT01_15155, ERS150876_00779, EYD11_06580, F1E19_01790, F7F00_00605, F7F23_09350, F7F26_01975, FQR64_06700, GHR40_11105, GKF74_08320, GKF86_10525, GKF89_17025, GP666_02180, GP935_11985, GQA06_13610, GQE30_13075, GQE34_24640, GQE51_05930, GRW80_06100, NCTC10963_01382, NCTC11126_06127, NCTC11341_00817, NCTC13216_00544, NCTC8960_04113, NCTC9045_01668, NCTC9062_01738, NCTC9962_06536, RK56_024520, SAMEA3472047_03904, SAMEA3484427_00338, SAMEA3484429_00447, SAMEA3752559_00798, SAMEA3753300_00971, SK85_02727 EC: 4.3.3.7
UniProt
Find proteins for P0A6L2 (Escherichia coli (strain K12)) Explore P0A6L2 Go to UniProtKB: P0A6L2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A6L2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain E [auth A] SDF format, chain H [auth B] SDF format, chain I [auth B] SDF format, chain J [auth B] MOL2 format, chain D [auth A] MOL2 format, chain E [auth A] MOL2 format, chain H [auth B] MOL2 format, chain I [auth B] MOL2 format, chain J [auth B]	D [auth A], E [auth A], H [auth B], I [auth B], J [auth B]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Focus chain E [auth A] Focus chain H [auth B] Focus chain I [auth B] Focus chain J [auth B] Interactions & Density Focus chain D [auth A] Focus chain E [auth A] Focus chain H [auth B] Focus chain I [auth B] Focus chain J [auth B]
K Query on K Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain F [auth A] SDF format, chain G [auth B] SDF format, chain K [auth B] MOL2 format, chain C [auth A] MOL2 format, chain F [auth A] MOL2 format, chain G [auth B] MOL2 format, chain K [auth B]	C [auth A], F [auth A], G [auth B], K [auth B]	POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain F [auth A] Focus chain G [auth B] Focus chain K [auth B] Interactions & Density Focus chain C [auth A] Focus chain F [auth A] Focus chain G [auth B] Focus chain K [auth B]