7JUP

Structure of human TRPA1 in complex with antagonist compound 21


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.05 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Tetrahydrofuran-Based Transient Receptor Potential Ankyrin 1 (TRPA1) Antagonists: Ligand-Based Discovery, Activity in a Rodent Asthma Model, and Mechanism-of-Action via Cryogenic Electron Microscopy.

Terrett, J.A.Chen, H.Shore, D.G.Villemure, E.Larouche-Gauthier, R.Dery, M.Beaumier, F.Constantineau-Forget, L.Grand-Maitre, C.Lepissier, L.Ciblat, S.Sturino, C.Chen, Y.Hu, B.Lu, A.Wang, Y.Cridland, A.P.Ward, S.I.Hackos, D.H.Reese, R.M.Shields, S.D.Chen, J.Balestrini, A.Riol-Blanco, L.Lee, W.P.Liu, J.Suto, E.Wu, X.Zhang, J.Ly, J.Q.La, H.Johnson, K.Baumgardner, M.Chou, K.J.Rohou, A.Rouge, L.Safina, B.S.Magnuson, S.Volgraf, M.

(2021) J Med Chem 64: 3843-3869

  • DOI: https://doi.org/10.1021/acs.jmedchem.0c02023
  • Primary Citation of Related Structures:  
    7JUP

  • PubMed Abstract: 

    Transient receptor potential ankyrin 1 (TRPA1) is a nonselective calcium-permeable ion channel highly expressed in the primary sensory neurons functioning as a polymodal sensor for exogenous and endogenous stimuli and has generated widespread interest as a target for inhibition due to its implication in neuropathic pain and respiratory disease. Herein, we describe the optimization of a series of potent, selective, and orally bioavailable TRPA1 small molecule antagonists, leading to the discovery of a novel tetrahydrofuran-based linker. Given the balance of physicochemical properties and strong in vivo target engagement in a rat AITC-induced pain assay, compound 20 was progressed into a guinea pig ovalbumin asthma model where it exhibited significant dose-dependent reduction of inflammatory response. Furthermore, the structure of the TRPA1 channel bound to compound 21 was determined via cryogenic electron microscopy to a resolution of 3 Å, revealing the binding site and mechanism of action for this class of antagonists.


  • Organizational Affiliation

    Department of Discovery Chemistry, Genentech, Inc., 1 DNA Way, South San Francisco, California 94080, United States.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transient receptor potential cation channel subfamily A member 1
A, B, C, D
631Homo sapiensMutation(s): 0 
Gene Names: TRPA1ANKTM1
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for O75762 (Homo sapiens)
Explore O75762 
Go to UniProtKB:  O75762
PHAROS:  O75762
GTEx:  ENSG00000104321 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO75762
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.05 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcisTEM
RECONSTRUCTIONPHENIX
MODEL REFINEMENTPHENIX
MODEL REFINEMENTCoot

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-03-31
    Type: Initial release
  • Version 1.1: 2021-04-21
    Changes: Database references
  • Version 1.2: 2024-03-06
    Changes: Data collection, Database references, Refinement description